Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P17989

Metabolite ID
P17989
Deionized mass
183.1067 Da
Average m/z
184.1130
Average RT
12.6742
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
51
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

51 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)2.184e-12
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 3Chr16:30652378–30659548 (+)2.488e-14
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 2Chr05:32021521–32025767 (-)1.801e-17
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)5.311e-12
Glyma.18G052300 hypothetical protein NA 2Chr18:4521958–4525815 (+)3.373e-12
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)6.383e-11
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)8.315e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)1.129e-12
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)4.304e-12
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)2.105e-11
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)2.105e-11
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)2.105e-11
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)2.105e-11
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)2.105e-11
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)2.105e-11
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)2.105e-11
Glyma.03G022900 hypothetical protein NA 1Chr03:2409690–2420328 (-)8.236e-11
Glyma.04G237000 hypothetical protein AT1G31910:AT1G31910:GHMP kinase family protein 1Chr04:50558708–50569783 (+)5.698e-11
Glyma.04G237200 hypothetical protein AT3G52210:AT3G52210:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr04:50576216–50582296 (-)5.698e-11
Glyma.04G237500 hypothetical protein AT5G15940:AT5G15940:NAD(P)-binding Rossmann-fold superfamily protein__AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold … 1Chr04:50604264–50609423 (+)5.698e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.385e-16
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)2.512e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)5.658e-14
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.801e-17
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.298e-19
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.084e-18
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.084e-18
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.084e-18
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.485e-12
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)6.284e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)2.184e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)2.184e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)9.906e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)9.906e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.341e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)3.218e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)3.218e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)1.22e-14
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)1.859e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)5.27e-12
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)2.998e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)2.296e-12
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)1.63e-11
Glyma.16G145200 hypothetical protein NA 1Chr16:30586018–30588859 (-)1.017e-11
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)7.717e-11
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)2.226e-13
Glyma.18G052100 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr18:4503897–4512049 (+)3.619e-12
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)4.916e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.89e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.89e-12
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)4.43e-13