Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P17875

Metabolite ID
P17875
Deionized mass
315.2141 Da
Average m/z
316.2195
Average RT
12.6486
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
84
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

84 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.01G045600 hypothetical protein NA 3Chr01:5242432–5245038 (-)7.257e-18
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)1.607e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)1.401e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.525e-13
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)2.035e-11
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 2Chr19:1148510–1149495 (+)2.035e-11
Glyma.01G045400 hypothetical protein NA 1Chr01:5140834–5144197 (-)6.057e-15
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)3.401e-16
Glyma.01G046600 hypothetical protein AT1G14280:PKS2:phytochrome kinase substrate 2 1Chr01:5379316–5382027 (-)2.724e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)8.187e-11
Glyma.01G234100 hypothetical protein AT5G13270:RARE1:Pentatricopeptide repeat (PPR) superfamily protein 1Chr01:56022128–56026001 (+)1.98e-11
Glyma.02G294000 hypothetical protein NA 1Chr02:47237993–47240495 (+)7.834e-11
Glyma.02G294500 hypothetical protein AT5G50850:MAB1:Transketolase family protein 1Chr02:47272683–47277831 (-)3.663e-11
Glyma.02G295900 hypothetical protein NA 1Chr02:47375932–47378006 (+)1.084e-11
Glyma.02G296200 hypothetical protein AT5G55390:EDM2:ENHANCED DOWNY MILDEW 2 1Chr02:47383044–47395946 (-)1.084e-11
Glyma.02G296300 hypothetical protein AT5G55400:AT5G55400:Actin binding Calponin homology (CH) domain-containing protein 1Chr02:47399263–47406220 (-)6.884e-13
Glyma.02G304500 hypothetical protein AT5G48300:ADG1:ADP glucose pyrophosphorylase 1 1Chr02:47950037–47954106 (+)1.809e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)7.663e-11
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)2.174e-12
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)7.638e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)1.322e-14
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.919e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.904e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.904e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.658e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)8.645e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)8.645e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)8.645e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)5.355e-14
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)2.397e-13
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)8.319e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.112e-12
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)8.354e-11
Glyma.06G081600 hypothetical protein AT5G11490:AT5G11490:adaptin family protein 1Chr06:6273644–6283819 (+)5.573e-11
Glyma.06G296500 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr06:48551973–48557217 (-)6.362e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)9.144e-11
Glyma.07G019900 hypothetical protein AT1G79870:AT1G79870:D-isomer specific 2-hydroxyacid dehydrogenase family protein 1Chr07:1561952–1564494 (+)9.583e-12
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)3.803e-13
Glyma.08G215400 hypothetical protein AT2G22750:AT2G22750:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:17463087–17467014 (+)3.116e-11
Glyma.08G215500 hypothetical protein AT2G22750:AT2G22750:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:17476921–17480079 (+)3.116e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)4.26e-16
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.242e-16
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)5.736e-15
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)6.043e-11
Glyma.11G061000 hypothetical protein AT4G37210:AT4G37210:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr11:4576441–4579697 (+)8.949e-11
Glyma.11G106400 CYP41 peptidyl-prolyl cis-trans isomerase CYP41 AT4G34960:AT4G34960:Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 1Chr11:8108697–8114349 (+)2.346e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)9.886e-13
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)9.886e-13
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.904e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.905e-11
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)6.328e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)7.053e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)7.053e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.672e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.672e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)2.672e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)2.672e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)1.724e-11
Glyma.14G077100 hypothetical protein AT5G42610:AT5G42610:calcium uniporter (DUF607) 1Chr14:6486139–6488935 (+)8.335e-11
Glyma.14G077200 hypothetical protein AT5G42620:AT5G42620:metalloendopeptidase / zinc ion binding protein 1Chr14:6498564–6506068 (+)8.335e-11
Glyma.14G077300 hypothetical protein AT1G75040:PR5:pathosis-related protein 5 1Chr14:6508609–6520744 (-)8.335e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)5.693e-14
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)5.213e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)5.213e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)9.875e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.505e-15
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)9.875e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)9.875e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.907e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)6.213e-11
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)2.143e-11
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)2.143e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)4.37e-13
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)4.37e-13
Glyma.16G041700 hypothetical protein AT1G64770:PnsB2:NDH-dependent cyclic electron flow 1 1Chr16:3909907–3912569 (+)6.111e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)2.33e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)2.33e-12
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)1.189e-12
Glyma.17G135100 hypothetical protein AT1G62840:AT1G62840:ankyrin repeat/KH domain protein (DUF1442) 1Chr17:10870710–10872285 (+)4.853e-13
Glyma.17G137100 hypothetical protein AT4G22860:AT4G22860:Cell cycle regulated microtubule associated protein 1Chr17:11065492–11072635 (+)3.588e-12
Glyma.18G021700 hypothetical protein NA 1Chr18:1590986–1596262 (-)1.084e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.324e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.324e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)1.55e-11