Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P17751

Metabolite ID
P17751
Deionized mass
950.2653 Da
Average m/z
951.2596
Average RT
12.6140
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
72
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

72 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)2.394e-13
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 3Chr03:5113019–5121557 (+)2.854e-13
Glyma.03G135300 hypothetical protein NA 3Chr03:35092248–35097578 (+)3.461e-15
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 3Chr13:31727841–31735910 (-)5.167e-14
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)7.52e-12
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)5.016e-11
Glyma.03G133000 hypothetical protein AT3G10140:RECA3:RECA homolog 3 2Chr03:34790211–34802509 (-)4.245e-11
Glyma.03G135200 hypothetical protein NA 2Chr03:35070964–35078620 (+)3.471e-15
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 2Chr05:32421116–32425198 (-)1.227e-11
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 2Chr06:48170133–48173010 (-)6.404e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)6.013e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 2Chr13:31720004–31725252 (+)5.167e-14
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)1.05e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)7.855e-12
Glyma.01G034300 hypothetical protein NA 1Chr01:3573149–3579461 (-)1.151e-12
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)3.166e-12
Glyma.03G007100 hypothetical protein AT5G17780:AT5G17780:alpha/beta-Hydrolases superfamily protein__AT5G17720:AT5G17720:alpha/beta-Hydrolases superfamily pr… 1Chr03:647777–651152 (-)4.098e-14
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)8.092e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.544e-12
Glyma.03G134800 hypothetical protein AT2G41640:AT2G41640:Glycosyltransferase family 61 protein__AT3G10320:AT3G10320:Glycosyltransferase family 61 protein 1Chr03:35014113–35016956 (+)1.654e-11
Glyma.03G135600 hypothetical protein NA 1Chr03:35109981–35110632 (-)2.415e-17
Glyma.03G136000 hypothetical protein NA 1Chr03:35138670–35188160 (-)3.954e-14
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)2.96e-16
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)4.328e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)4.328e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.167e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)6.142e-15
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)6.142e-15
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)6.142e-15
Glyma.05G130600 hypothetical protein AT1G30040:GA2OX2:gibberellin 2-oxidase 1Chr05:32352085–32354865 (+)1.732e-11
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)1.363e-11
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)1.204e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.949e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.649e-22
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.955e-31
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.512e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.512e-12
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)1.43e-11
Glyma.06G292400 hypothetical protein AT4G28320:MAN5:Glycosyl hydrolase superfamily protein 1Chr06:48130296–48134955 (+)6.285e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)3.999e-12
Glyma.08G112600 hypothetical protein NA 1Chr08:8660670–8663379 (-)7.633e-12
Glyma.08G112700 hypothetical protein NA 1Chr08:8661027–8661191 (+)7.633e-12
Glyma.08G139300 hypothetical protein AT2G22125:CSI1:binding protein 1Chr08:10653279–10664544 (-)1.521e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)2.33e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)6.344e-11
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)8.971e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.391e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.391e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.391e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.391e-11
Glyma.11G179000 hypothetical protein AT2G27230:LHW:transcription factor-like protein 1Chr11:24412040–24417199 (+)1.697e-16
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)6.013e-11
Glyma.13G203600 hypothetical protein AT5G13490:AAC2:ADP/ATP carrier 2 1Chr13:31753843–31756013 (-)1.123e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)5.167e-14
Glyma.15G139000 hypothetical protein NA 1Chr15:11314329–11317181 (-)5.639e-11
Glyma.16G062500 hypothetical protein NA 1Chr16:6099546–6105267 (-)4.224e-11
Glyma.16G063000 hypothetical protein AT1G60170:emb1220:pre-mRNA processing ribonucleoprotein binding region-containing protein 1Chr16:6182396–6189113 (+)7.019e-12
Glyma.16G066000 hypothetical protein AT5G40660:AT5G40660:ATP12 protein-like protein 1Chr16:6570689–6574950 (+)1.565e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)2.394e-13
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)4.585e-12
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)7.52e-12
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)7.52e-12
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)7.52e-12
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)7.52e-12
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)2.286e-11
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)8.158e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)5.016e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)5.016e-11
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)1.258e-11
Glyma.18G045700 hypothetical protein NA 1Chr18:3956176–3958846 (+)8.223e-13
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr19:472201–476152 (-)1.227e-14
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)5.305e-11