Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P17680

Metabolite ID
P17680
Deionized mass
372.1197 Da
Average m/z
373.1259
Average RT
12.5970
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
141
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

141 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)7.341e-12
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)5.253e-11
Glyma.20G071200 hypothetical protein NA 4Chr20:25316540–25366827 (+)2.959e-12
Glyma.06G313500 hypothetical protein NA 3Chr06:50191600–50203098 (-)5.681e-14
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)1.662e-14
Glyma.02G006500 hypothetical protein AT4G01660:ABC1:ABC transporter 1 2Chr02:693193–700260 (+)7.098e-11
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 2Chr08:9198213–9201688 (-)3.745e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)8.765e-11
Glyma.09G018700 hypothetical protein NA 2Chr09:1470411–1472672 (-)1.41e-12
Glyma.09G039600 hypothetical protein AT4G16143:IMPA-2:importin alpha isoform 2 2Chr09:3311309–3315529 (+)4.467e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)3.274e-15
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)3.274e-15
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.017e-13
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)5.253e-11
Glyma.20G070800 VAD1 AT1G02120:VAD1:GRAM domain family protein 2Chr20:25156336–25176331 (-)2.959e-12
Glyma.20G084900 hypothetical protein NA 2Chr20:31707347–31709780 (-)2.959e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)3.354e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)3.354e-12
Glyma.02G062600 hypothetical protein AT2G23540:AT2G23540:GDSL-like Lipase/Acylhydrolase superfamily protein 1Chr02:5645621–5648965 (+)6.953e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)1.539e-15
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)4.708e-11
Glyma.02G121500 hypothetical protein NA 1Chr02:12065640–12082937 (+)1.068e-12
Glyma.02G125700 hypothetical protein NA 1Chr02:12589185–12591860 (-)3.486e-15
Glyma.02G126000 hypothetical protein AT2G04032:ZIP7:zinc transporter 7 1Chr02:12604129–12606075 (+)8.031e-12
Glyma.02G126300 hypothetical protein NA 1Chr02:12670653–12677305 (+)1.078e-13
Glyma.02G126400 hypothetical protein NA 1Chr02:12678071–12683492 (+)1.078e-13
Glyma.02G126800 hypothetical protein AT1G13580:LAG13:LAG1 longevity assurance-like protein__AT3G25540:LAG1:TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain co… 1Chr02:12771578–12777488 (+)1.078e-13
Glyma.02G127000 hypothetical protein AT1G13580:LAG13:LAG1 longevity assurance-like protein 1Chr02:12798511–12806795 (+)1.302e-12
Glyma.02G127400 hypothetical protein AT1G26190:AT1G26190:Phosphoribulokinase / Uridine kinase family 1Chr02:12849745–12869066 (+)1.078e-13
Glyma.02G127600 hypothetical protein NA 1Chr02:12976382–12983547 (+)1.078e-13
Glyma.02G129200 hypothetical protein AT1G26160:AT1G26160:Metal-dependent phosphohydrolase 1Chr02:13217893–13226292 (+)1.94e-11
Glyma.02G130200 hypothetical protein AT1G68740:PHO1;H1:EXS (ERD1/XPR1/SYG1) family protein 1Chr02:13340016–13346701 (-)1.94e-11
Glyma.02G130700 hypothetical protein AT1G68750:PPC4:phosphoenolpyruvate carboxylase 4 1Chr02:13470428–13489647 (-)1.94e-11
Glyma.02G131600 hypothetical protein AT4G34020:DJ1C:Class I glutamine amidotransferase-like superfamily protein 1Chr02:13577916–13581914 (+)1.94e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)4.155e-12
Glyma.02G151500 hypothetical protein AT2G47990:SWA1:transducin family protein / WD-40 repeat family protein 1Chr02:15586732–15588774 (+)7.054e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)1.987e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)7.96e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)8.72e-17
Glyma.03G035400 hypothetical protein AT3G42630:AT3G42630:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:4282985–4285957 (-)3.003e-11
Glyma.03G035500 hypothetical protein NA 1Chr03:4289118–4294184 (+)5.159e-11
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)2.384e-14
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)9.094e-11
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)1.715e-11
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)5.017e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)5.368e-11
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)2.131e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.176e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.427e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.427e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.427e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)8.214e-11
Glyma.05G232400 hypothetical protein AT3G24440:VRN5:Fibronectin type III domain-containing protein 1Chr05:40992124–41003814 (+)6.469e-11
Glyma.05G232600 hypothetical protein AT4G13360:AT4G13360:ATP-dependent caseinolytic (Clp) protease/crotonase family protein__AT3G24360:AT3G24360:ATP-depende… 1Chr05:41009642–41015826 (+)5.43e-11
Glyma.05G232800 hypothetical protein AT3G18500:AT3G18500:DNAse I-like superfamily protein 1Chr05:41022747–41030067 (-)5.43e-11
Glyma.05G233100 hypothetical protein NA 1Chr05:41041130–41048359 (-)5.43e-11
Glyma.05G233400 ALMT9 aluminum-activated malate transporter 9 AT3G18440:ALMT9:aluminum-activated malate transporter 9 1Chr05:41058365–41063472 (-)5.43e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.337e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.405e-16
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)5.506e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.336e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.336e-11
Glyma.06G209300 hypothetical protein NA 1Chr06:20573671–20581076 (-)5.59e-11
Glyma.06G283200 hypothetical protein NA 1Chr06:47114654–47119627 (-)6.592e-11
Glyma.06G283600 hypothetical protein NA 1Chr06:47144786–47149722 (+)6.592e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)2.864e-14
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)2.54e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)2.864e-14
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)2.864e-14
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)2.54e-11
Glyma.06G292400 hypothetical protein AT4G28320:MAN5:Glycosyl hydrolase superfamily protein 1Chr06:48130296–48134955 (+)1.331e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)5.648e-13
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)5.624e-11
Glyma.08G118500 hypothetical protein NA 1Chr08:9161382–9162471 (+)8.67e-15
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)8.765e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)8.765e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)8.765e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)8.765e-11
Glyma.09G039300 hypothetical protein NA 1Chr09:3296096–3300443 (+)4.467e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.808e-11
Glyma.09G133800 hypothetical protein NA 1Chr09:33268295–33269240 (+)9.179e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)8.808e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)1.192e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)8.891e-12
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)8.891e-12
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)8.891e-12
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)8.891e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.376e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.376e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)9.283e-13
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)9.283e-13
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)9.03e-12
Glyma.12G196800 hypothetical protein AT4G15180:SDG2:SET domain protein 2 1Chr12:35784957–35801339 (+)6.575e-12
Glyma.12G197400 TPS14 terpene synthase 14 NA 1Chr12:35854108–35858237 (+)8.897e-11
Glyma.12G197600 hypothetical protein AT4G03210:XTH9:xyloglucan endotransglucosylase/hydrolase 9 1Chr12:35879106–35881779 (+)2.6e-13
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)3.64e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)3.64e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)4.169e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)5.856e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)5.856e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.662e-14
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)2.433e-14
Glyma.13G135100 hypothetical protein AT5G02750:SGR9:RING/U-box superfamily protein 1Chr13:24744740–24746437 (+)2.668e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)4.208e-15
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)4.208e-15
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.274e-15
Glyma.13G142200 hypothetical protein AT1G33410:SAR1:SUPPRESSOR OF AUXIN RESISTANCE1 1Chr13:25483702–25502265 (+)7.18e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)8.24e-11
Glyma.13G237900 hypothetical protein NA 1Chr13:34809361–34816888 (-)1.878e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)2.931e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)1.078e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.078e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.302e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.95e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.302e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.302e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.093e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.845e-14
Glyma.16G161500 hypothetical protein NA 1Chr16:32076715–32092322 (-)1.584e-12
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr16:35831912–35835153 (+)3.989e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)1.1e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)8.369e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)8.369e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.037e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.037e-12
Glyma.19G102000 ICE2 AT3G26744:ICE1:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr19:34998146–35001862 (+)4.122e-11
Glyma.19G102200 hypothetical protein AT2G31410:AT2G31410:coiled-coil protein 1Chr19:35024582–35025690 (+)4.122e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)5.147e-11
Glyma.20G070100 hypothetical protein NA 1Chr20:24897324–24898925 (-)2.959e-12
Glyma.20G071000 hypothetical protein NA 1Chr20:25298698–25300941 (+)2.959e-12
Glyma.20G074500 hypothetical protein AT2G38710:AT2G38710:AMMECR1 family 1Chr20:26796617–26809116 (-)2.959e-12
Glyma.20G074600 hypothetical protein NA 1Chr20:26803189–26805842 (+)2.959e-12
Glyma.20G076500 hypothetical protein AT1G04780:AT1G04780:Ankyrin repeat family protein 1Chr20:27700886–27708055 (+)2.959e-12
Glyma.20G083800 hypothetical protein NA 1Chr20:31482676–31483763 (-)2.959e-12
Glyma.20G083900 hypothetical protein NA 1Chr20:31503404–31505246 (-)2.959e-12
Glyma.20G084000 hypothetical protein AT4G30220:RUXF:small nuclear ribonucleoprotein F__AT2G14285:AT2G14285:Small nuclear ribonucleoprotein family protein 1Chr20:31536334–31538924 (+)2.959e-12
Glyma.20G084500 hypothetical protein AT2G33340:MAC3B:MOS4-associated complex 3B__AT1G04510:MAC3A:MOS4-associated complex 3A 1Chr20:31666190–31674959 (-)2.959e-12
Glyma.20G084700 hypothetical protein NA 1Chr20:31686813–31687483 (-)2.959e-12
Glyma.20G085000 hypothetical protein NA 1Chr20:31745486–31748473 (-)2.959e-12
Glyma.20G085300 hypothetical protein AT2G33360:AT2G33360:cadherin EGF LAG seven-pass G-type receptor, putative (DUF3527) 1Chr20:31823173–31827117 (+)2.959e-12
Glyma.20G085400 hypothetical protein NA 1Chr20:31828204–31832688 (+)2.959e-12