Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P17625

Metabolite ID
P17625
Deionized mass
497.1488 Da
Average m/z
498.1541
Average RT
12.5824
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
65
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

65 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 2Chr03:2423540–2428634 (-)4.634e-14
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)2.101e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.312e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.312e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)8.376e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)2.598e-11
Glyma.20G120200 hypothetical protein NA 2Chr20:36268998–36282456 (-)9.009e-12
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)8.813e-11
Glyma.02G253300 hypothetical protein NA 1Chr02:44063023–44065910 (-)3.151e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)7.482e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)9.279e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)5.434e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.404e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.577e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.259e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.259e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)4.717e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)7.793e-11
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)7.793e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)6.806e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)2.049e-12
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)2.735e-11
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)1.889e-11
Glyma.09G075500 hypothetical protein NA 1Chr09:8234794–8241097 (+)6.332e-12
Glyma.09G075600 hypothetical protein AT1G34630:AT1G34630:uncharacterized protein 1Chr09:8255346–8260648 (-)6.332e-12
Glyma.09G078300 hypothetical protein AT4G29400:AT4G29400:oxidoreductase/transition metal ion-binding protein (DUF3531) 1Chr09:8708840–8718819 (-)6.332e-12
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)5.635e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)7.981e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)6.183e-12
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)7.253e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)7.253e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)3.269e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)2.772e-12
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)4.715e-12
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)4.714e-12
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)4.714e-12
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)4.715e-12
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)1.099e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)8.31e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)8.31e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)2.529e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)2.529e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.035e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.035e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)5.365e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)5.365e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.312e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)5.099e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)2.598e-11
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)1.39e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)2.215e-11
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)2.215e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)9.369e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)5.459e-12
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)9.707e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)9.707e-12
Glyma.18G098900 hypothetical protein NA 1Chr18:10297476–10305043 (+)5.327e-11
Glyma.18G099000 hypothetical protein AT5G54920:AT5G54920:polyadenylate-binding protein interacting protein 1Chr18:10326925–10347143 (-)5.327e-11
Glyma.18G100200 hypothetical protein NA 1Chr18:10512806–10522231 (+)4.167e-11
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)6.211e-11
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)9.056e-11
Glyma.18G301600 hypothetical protein AT2G33490:AT2G33490:hydroxyproline-rich glycoprotein family protein 1Chr18:57939468–57945328 (+)5.576e-11
Glyma.18G301900 hypothetical protein AT5G13190:GILP:GSH-induced LITAF domain protein 1Chr18:57953323–57956369 (-)6.95e-12
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)2.697e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.683e-11