Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P17424

Metabolite ID
P17424
Deionized mass
732.3349 Da
Average m/z
733.3389
Average RT
12.5343
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
51
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

51 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)3.292e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)3.255e-14
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.165e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)9.46e-11
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)7.065e-14
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)9.753e-11
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)1.555e-11
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)3.552e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.177e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.177e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.041e-14
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)1.087e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)5.947e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.457e-17
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.158e-11
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)8.395e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)4.478e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)7.866e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)6.193e-11
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)8.724e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)5.746e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)5.746e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)5.746e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)5.746e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)3.331e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.944e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.944e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)3.177e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)3.177e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.827e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.827e-13
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)1.227e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.71e-15
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)3.255e-14
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)1.657e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)9.844e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)6.459e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)6.459e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)6.459e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)9.46e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)7.065e-14
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)2.755e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)9.753e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)5.243e-11
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 1Chr16:30514629–30519598 (+)5.72e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)3.233e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)3.233e-11
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)1.555e-11
Glyma.17G212300 hypothetical protein AT5G25310:AT5G25310:Exostosin family protein 1Chr17:35122156–35129564 (-)4.765e-11
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)3.552e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)1.315e-11