Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P17386

Metabolite ID
P17386
Deionized mass
263.0807 Da
Average m/z
264.0867
Average RT
12.5273
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
46
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

46 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)4.612e-11
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.235e-11
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)1.588e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)9.296e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)9.296e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.406e-12
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)2.491e-15
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)4.437e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)2.792e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)3.716e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)3.707e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)3.706e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.322e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)7.863e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)7.863e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)7.863e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.11e-11
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)7.027e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)9.275e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.688e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.688e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.091e-14
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.091e-14
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)3.602e-12
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)7.399e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.235e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)6.61e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)6.626e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)6.61e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)6.61e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)8.646e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.337e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)5.875e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)7.783e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)2.999e-12
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)3.14e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)4.744e-12
Glyma.16G180000 hypothetical protein NA 1Chr16:34064572–34069421 (+)8.043e-11
Glyma.16G180100 hypothetical protein NA 1Chr16:34070806–34076053 (+)8.043e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)3.453e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)3.453e-12
Glyma.17G135100 hypothetical protein AT1G62840:AT1G62840:ankyrin repeat/KH domain protein (DUF1442) 1Chr17:10870710–10872285 (+)7.763e-11
Glyma.18G231500 hypothetical protein NA 1Chr18:52019138–52019828 (-)7.903e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.59e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.59e-12
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)5.75e-11