Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P17296

Metabolite ID
P17296
Deionized mass
476.1754 Da
Average m/z
477.1803
Average RT
12.5035
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
44
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

44 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)7.395e-14
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)7.552e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.354e-13
Glyma.03G027900 hypothetical protein AT2G45270:GCP1:glycoprotease 1 1Chr03:3048805–3061575 (-)3.391e-12
Glyma.04G062500 hypothetical protein NA 1Chr04:5158262–5163060 (-)3.776e-11
Glyma.05G166400 hypothetical protein NA 1Chr05:35692494–35699192 (+)9.231e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.36e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)2.642e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.273e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)5.932e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)5.932e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)3.053e-13
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)1.222e-12
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)2.233e-14
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)4.971e-17
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)2.342e-16
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)2.342e-16
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)2.342e-16
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)2.342e-16
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)2.082e-11
Glyma.11G241000 hypothetical protein AT4G39960:AT4G39960:Molecular chaperone Hsp40/DnaJ family protein 1Chr11:33526493–33531210 (+)9.46e-12
Glyma.11G241400 hypothetical protein AT4G40000:AT4G40000:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr11:33556332–33563163 (-)8.929e-11
Glyma.11G241900 hypothetical protein NA 1Chr11:33589346–33594428 (-)8.93e-11
Glyma.12G193800 hypothetical protein AT2G05710:ACO3:aconitase 3 1Chr12:35551596–35559129 (+)8.816e-11
Glyma.14G094200 hypothetical protein AT5G11840:AT5G11840:YCF36, putative (DUF1230) 1Chr14:8770378–8774149 (-)1.596e-11
Glyma.14G094300 hypothetical protein NA 1Chr14:8771316–8772515 (+)1.596e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)1.638e-15
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)7.552e-13
Glyma.14G197700 hypothetical protein AT5G58470:TAF15b:TBP-associated factor 15B 1Chr14:46291986–46298337 (+)1.111e-11
Glyma.14G198000 hypothetical protein NA 1Chr14:46334117–46336863 (+)1.111e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.208e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)3.969e-15
Glyma.16G157200 hypothetical protein AT1G71850:AT1G71850:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr16:31774664–31777363 (+)2.167e-15
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)1.154e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.154e-11
Glyma.18G213300 hypothetical protein AT5G43180:AT5G43180:transmembrane protein, putative (Protein of unknown function, DUF599) 1Chr18:50026808–50028261 (-)6.421e-11
Glyma.18G213400 hypothetical protein NA 1Chr18:50037003–50043647 (+)6.421e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)9.395e-13
Glyma.18G231500 hypothetical protein NA 1Chr18:52019138–52019828 (-)1.248e-14
Glyma.19G144200 hypothetical protein AT2G42280:FBH4:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr19:40545843–40548762 (+)1.606e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)1.298e-13
Glyma.19G245800 hypothetical protein AT3G04690:ANX1:Malectin/receptor-like protein kinase family protein 1Chr19:49263978–49267290 (+)5.829e-15
Glyma.19G246000 hypothetical protein AT3G04630:WDL1:WVD2-like 1 1Chr19:49272477–49277569 (-)5.35e-14
Glyma.19G246100 hypothetical protein NA 1Chr19:49285339–49287223 (+)7.939e-11