Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P17056

Metabolite ID
P17056
Deionized mass
478.1736 Da
Average m/z
479.1783
Average RT
12.4411
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
58
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

58 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)3.718e-11
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 2Chr08:8768854–8772973 (-)2.296e-12
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 2Chr08:9065033–9071774 (-)6.619e-13
Glyma.08G117700 hypothetical protein NA 2Chr08:9080318–9084658 (-)4.93e-14
Glyma.08G118600 hypothetical protein AT1G29300:UNE1:intracellular protein transporter, putative (DUF641) 2Chr08:9169843–9172229 (-)1.649e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)3.662e-15
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.686e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.935e-12
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)2.01e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)3.718e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)3.322e-12
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)5.732e-11
Glyma.01G017900 hypothetical protein NA 1Chr01:1734474–1735545 (+)3.213e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)7.334e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)7.344e-12
Glyma.03G016900 hypothetical protein NA 1Chr03:1702419–1707451 (+)8.332e-11
Glyma.03G020800 hypothetical protein AT3G61050:NTMC2T4:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr03:2124895–2135692 (-)1.49e-12
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 1Chr03:2202325–2234931 (+)4.882e-13
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)5.519e-13
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)6.039e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)4.875e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)8.862e-11
Glyma.03G169700 hypothetical protein AT2G20240:TRM17:GPI-anchored adhesin-like protein, putative (DUF3741)__AT4G28760:TRM20:methyl-coenzyme M reductase II s… 1Chr03:38442950–38448706 (+)6.599e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)6.489e-13
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 1Chr03:44064511–44073939 (+)1.426e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.621e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)2.148e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)5.219e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)5.219e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)7.733e-12
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)8.967e-11
Glyma.06G136200 hypothetical protein AT5G54170:AT5G54170:Polyketide cyclase/dehydrase and lipid transport superfamily protein 1Chr06:11160066–11162505 (-)4.145e-11
Glyma.07G071800 hypothetical protein AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein 1Chr07:6523253–6526707 (+)1.347e-11
Glyma.07G078300 hypothetical protein NA 1Chr07:7150800–7154478 (-)2.593e-12
Glyma.08G109000 SUB1 NA 1Chr08:8364770–8373803 (-)2.177e-11
Glyma.08G110000 hypothetical protein AT3G23840:AT3G23840:HXXXD-type acyl-transferase family protein 1Chr08:8438346–8442806 (-)2.177e-11
Glyma.08G110200 hypothetical protein NA 1Chr08:8471393–8473156 (+)7.548e-11
Glyma.08G117400 hypothetical protein AT4G18750:DOT4:Pentatricopeptide repeat (PPR) superfamily protein 1Chr08:9054060–9063297 (+)2.08e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)6.619e-13
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.21e-11
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)4.431e-11
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)4.431e-11
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)8.426e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)8.689e-13
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)6.964e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)2.579e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)5.329e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)8.062e-15
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.686e-12
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.935e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)3.524e-14
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)2.98e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)3.192e-12
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)1.664e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)6.911e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)6.911e-13
Glyma.19G102000 ICE2 AT3G26744:ICE1:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr19:34998146–35001862 (+)5.186e-11
Glyma.19G102200 hypothetical protein AT2G31410:AT2G31410:coiled-coil protein 1Chr19:35024582–35025690 (+)5.186e-11