Overview Annotation GWAS Evidence Associated genes

P17052

Metabolite ID
P17052
Deionized mass
496.0998 Da
Average m/z
497.1050
Average RT
12.4406
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
156
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

156 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)1.025e-16
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)2.836e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)2.644e-12
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)7.446e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)1.114e-13
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)1.114e-13
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)4.558e-11
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 2Chr05:32421116–32425198 (-)4.663e-13
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)8.703e-12
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)8.701e-12
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)8.703e-12
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)1.056e-12
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)2.033e-12
Glyma.16G105100 hypothetical protein NA 2Chr16:21259552–21267517 (-)1.081e-11
Glyma.16G111100 hypothetical protein NA 2Chr16:24438458–24444801 (+)1.025e-16
Glyma.16G111800 hypothetical protein AT2G17520:IRE1A:Endoribonuclease/protein kinase IRE1-like protein 2Chr16:24720965–24731678 (-)7.771e-12
Glyma.16G115500 hypothetical protein NA 2Chr16:25622503–25630816 (+)7.446e-12
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 2Chr16:26057276–26069534 (+)9.013e-15
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)2.83e-17
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)2.836e-11
Glyma.01G021600 hypothetical protein AT5G65540:AT5G65540:transcription initiation factor TFIID subunit 1Chr01:2189923–2194362 (-)5.431e-11
Glyma.01G021700 hypothetical protein NA 1Chr01:2197811–2200232 (+)9.852e-11
Glyma.01G022000 hypothetical protein NA 1Chr01:2209688–2210849 (-)9.852e-11
Glyma.01G022200 hypothetical protein NA 1Chr01:2212834–2213622 (+)9.852e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)2.038e-11
Glyma.03G007100 hypothetical protein AT5G17780:AT5G17780:alpha/beta-Hydrolases superfamily protein__AT5G17720:AT5G17720:alpha/beta-Hydrolases superfamily pr… 1Chr03:647777–651152 (-)8.695e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)9.193e-11
Glyma.03G019700 hypothetical protein AT3G61130:GAUT1:galacturonosyltransferase 1 1Chr03:2010835–2018418 (+)6.507e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.951e-13
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)4.636e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)6.588e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)2.004e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)6.212e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)3.581e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)3.581e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)7.972e-17
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)4.62e-16
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)4.62e-16
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)4.62e-16
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)3.42e-14
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)1.675e-12
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)1.851e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.474e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)6.028e-20
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.52e-20
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.351e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.351e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.351e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)4.783e-17
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)4.783e-17
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)1.758e-13
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)2.961e-17
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)4.509e-12
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)5.359e-11
Glyma.06G275800 hypothetical protein AT2G30980:SKdZeta:SHAGGY-related protein kinase dZeta 1Chr06:46677753–46682900 (-)4.592e-12
Glyma.06G286100 hypothetical protein AT1G23280:AT1G23280:MAK16 protein-like protein 1Chr06:47455227–47461077 (+)4.848e-11
Glyma.06G286200 hypothetical protein NA 1Chr06:47465164–47467099 (+)2.682e-11
Glyma.06G286400 hypothetical protein NA 1Chr06:47479202–47486309 (+)4.848e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)4.193e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)1.566e-12
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)4.193e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)4.193e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)1.566e-12
Glyma.06G292400 hypothetical protein AT4G28320:MAN5:Glycosyl hydrolase superfamily protein 1Chr06:48130296–48134955 (+)2.03e-13
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 1Chr06:48170133–48173010 (-)3.867e-13
Glyma.06G305100 hypothetical protein NA 1Chr06:49413291–49417661 (-)3.784e-11
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)3.439e-13
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)3.439e-13
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.706e-14
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)1.229e-14
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)1.267e-12
Glyma.08G112600 hypothetical protein NA 1Chr08:8660670–8663379 (-)1.219e-14
Glyma.08G112700 hypothetical protein NA 1Chr08:8661027–8661191 (+)1.219e-14
Glyma.08G148500 hypothetical protein AT3G19860:bHLH121:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:11362991–11368184 (-)1.572e-11
Glyma.09G069400 hypothetical protein NA 1Chr09:7055066–7058933 (+)7.251e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)5.837e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)8.7e-12
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)8.7e-12
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)8.702e-12
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)5.554e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)8.703e-12
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)8.703e-12
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)2.521e-11
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)6.26e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)7.081e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)3.574e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)3.574e-13
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)3.574e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)3.574e-13
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)3.536e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)3.456e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)2.765e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)2.765e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)2.765e-11
Glyma.11G182600 hypothetical protein AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein 1Chr11:24998933–25003549 (-)2.105e-13
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)7.806e-13
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.184e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.184e-12
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)6.734e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)2.644e-12
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)6.108e-11
Glyma.13G277400 hypothetical protein NA 1Chr13:37872791–37879361 (+)3.639e-11
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)1.129e-12
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)1.129e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)6.211e-15
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.39e-14
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)6.211e-15
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)6.211e-15
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)7.8e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.43e-18
Glyma.16G031600 hypothetical protein NA 1Chr16:2964569–2985013 (+)1.34e-11
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)2.355e-11
Glyma.16G066000 hypothetical protein AT5G40660:AT5G40660:ATP12 protein-like protein 1Chr16:6570689–6574950 (+)4.332e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)2.573e-12
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)1.095e-11
Glyma.16G111200 hypothetical protein AT5G65930:ZWI:kinesin-like calmodulin-binding protein (ZWICHEL) 1Chr16:24455709–24466236 (+)8.112e-12
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)1.968e-15
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)7.446e-12
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)7.446e-12
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)7.446e-12
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)7.89e-13
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)1.35e-12
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)1.114e-13
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)1.114e-13
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)7.569e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)4.117e-11
Glyma.16G143400 hypothetical protein NA 1Chr16:30337469–30338390 (-)1.826e-11
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)1.292e-11
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 1Chr16:30514629–30519598 (+)5.318e-12
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)4.928e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)4.928e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.011e-15
Glyma.16G180200 hypothetical protein NA 1Chr16:34077613–34081734 (+)3.817e-12
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)2.469e-13
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)5.409e-12
Glyma.16G194000 hypothetical protein AT3G48900:AT3G48900:single-stranded DNA endonuclease family protein 1Chr16:35625666–35634395 (-)2.138e-11
Glyma.16G194100 hypothetical protein NA 1Chr16:35633570–35637343 (+)2.138e-11
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)1.48e-11
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)1.457e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)6.199e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)2.292e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)2.292e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)2.208e-14
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)9.466e-12
Glyma.17G251800 hypothetical protein NA 1Chr17:40633579–40636068 (+)5.037e-11
Glyma.17G251900 hypothetical protein AT1G19600:AT1G19600:pfkB-like carbohydrate kinase family protein 1Chr17:40641019–40644794 (+)5.037e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)8.97e-11
Glyma.18G202100 hypothetical protein AT3G51850:CPK13:calcium-dependent protein kinase 13 1Chr18:48258271–48266554 (-)3.34e-11
Glyma.18G266400 hypothetical protein AT3G29390:RIK:RS2-interacting KH protein 1Chr18:55076548–55086297 (+)1.915e-11
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr19:472201–476152 (-)4.745e-16
Glyma.20G033600 hypothetical protein NA 1Chr20:4581093–4581402 (-)5.225e-11
Glyma.20G034000 hypothetical protein AT2G03060:AGL30:AGAMOUS-like 30 1Chr20:4655939–4664465 (-)6.548e-12
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)4.974e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)1.963e-11
Glyma.20G129900 hypothetical protein NA 1Chr20:37091399–37092697 (-)7.905e-11
Glyma.20G179600 hypothetical protein AT2G39220:PLP6:PATATIN-like protein 6__AT3G54950:pPLAIIIbeta:patatin-like protein 6 1Chr20:41714740–41719977 (-)6.829e-11