Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P17039

Metabolite ID
P17039
Deionized mass
312.0811 Da
Average m/z
313.0897
Average RT
12.4371
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
75
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

75 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)6.905e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.856e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)2.712e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.778e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)6.263e-14
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.332e-17
Glyma.15G107500 hypothetical protein NA 2Chr15:8435042–8443925 (+)4.65e-11
Glyma.02G303600 hypothetical protein NA 1Chr02:47883626–47887124 (-)2.896e-11
Glyma.02G303700 hypothetical protein NA 1Chr02:47892900–47896207 (+)2.896e-11
Glyma.02G304000 hypothetical protein AT1G51350:AT1G51350:ARM repeat superfamily protein 1Chr02:47908136–47915999 (-)2.896e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)1.921e-15
Glyma.04G014300 hypothetical protein AT1G20880:AT1G20880:RNA-binding (RRM/RBD/RNP motifs) family protein 1Chr04:1101709–1106543 (+)1.967e-13
Glyma.04G014600 hypothetical protein NA 1Chr04:1119108–1123175 (+)1.967e-13
Glyma.04G015500 hypothetical protein AT2G33670:MLO5:Seven transmembrane MLO family protein 1Chr04:1176657–1181234 (-)2.685e-14
Glyma.04G062500 hypothetical protein NA 1Chr04:5158262–5163060 (-)5.906e-11
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)1.507e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)5.551e-13
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)3.234e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)6.858e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.932e-13
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr06:10709045–10716245 (-)6.598e-11
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)7.264e-12
Glyma.06G133700 Pyridoxal reductase, chloroplastic AT5G53580:PLR1:NAD(P)-linked oxidoreductase superfamily protein 1Chr06:10995438–10999422 (-)4.188e-11
Glyma.06G285400 hypothetical protein AT1G06290:ACX3:acyl-CoA oxidase 3 1Chr06:47399250–47406151 (+)7.256e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.856e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.856e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.856e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.856e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)3.487e-11
Glyma.08G220200 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr08:17889781–17898867 (+)7.986e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)4.771e-11
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)8.398e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.705e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.705e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.705e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)2.509e-14
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)5.661e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)2.108e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)6.263e-14
Glyma.14G149000 hypothetical protein NA 1Chr14:32164321–32167686 (+)3.099e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.332e-17
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)3.185e-11
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)1.906e-15
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)1.906e-15
Glyma.15G107800 hypothetical protein AT1G64570:DUO3:Homeodomain-like superfamily protein 1Chr15:8473049–8483746 (+)3.844e-15
Glyma.15G108100 hypothetical protein NA 1Chr15:8500878–8505582 (-)3.644e-13
Glyma.15G110200 hypothetical protein NA 1Chr15:8634006–8639001 (-)2.736e-13
Glyma.15G111000 hypothetical protein AT1G62305:AT1G62305:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein__AT1G11940:AT1G11940:Cor… 1Chr15:8692505–8697919 (-)7.604e-11
Glyma.15G111200 hypothetical protein AT1G11950:AT1G11950:Transcription factor jumonji (jmjC) domain-containing protein 1Chr15:8705907–8710609 (-)2.743e-13
Glyma.15G111900 hypothetical protein NA 1Chr15:8769366–8777275 (-)8.984e-11
Glyma.15G112100 hypothetical protein AT4G04180:AT4G04180:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr15:8796403–8805644 (-)8.984e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)8.921e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)4.791e-12
Glyma.16G019400 SHAT1-5 NAC domain-containing protein 43-like NA 1Chr16:1725643–1728272 (+)2.142e-11
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)4.661e-12
Glyma.16G020500 hypothetical protein AT4G00870:AT4G00870:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr16:1877938–1879947 (-)2.069e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)7.643e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)8.807e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)9.413e-12
Glyma.17G006300 hypothetical protein AT4G16380:AT4G16380:Heavy metal transport/detoxification superfamily protein 1Chr17:586135–588091 (+)8.282e-11
Glyma.17G007000 hypothetical protein NA 1Chr17:615525–616722 (+)8.282e-11
Glyma.17G007300 hypothetical protein AT4G16440:NAR1:ferredoxin hydrogenase 1Chr17:621626–627757 (-)8.282e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)5.114e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)5.114e-11
Glyma.17G092800 hypothetical protein NA 1Chr17:7253511–7255621 (-)3.623e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)5.012e-12
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)5.988e-12
Glyma.19G150000 hypothetical protein AT3G58060:AT3G58060:Cation efflux family protein 1Chr19:41018746–41025024 (+)7.048e-12
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)4.762e-13
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)3.54e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)7.114e-13
Glyma.20G022500 hypothetical protein NA 1Chr20:2342943–2353164 (+)9.059e-11
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)3.324e-11
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)2.704e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)8.252e-11