Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P16859

Metabolite ID
P16859
Deionized mass
320.1359 Da
Average m/z
321.1410
Average RT
12.3826
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
63
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

63 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)7.922e-12
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 2Chr04:7187985–7192897 (+)3.508e-12
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 2Chr08:9065033–9071774 (-)5.737e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)7.832e-14
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)2.815e-13
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)1.396e-11
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)2.176e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)2.125e-12
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)6.416e-12
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)8.838e-11
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)8.839e-11
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)8.839e-11
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)8.839e-11
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)8.838e-11
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)8.838e-11
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)8.839e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)5.667e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)5.667e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)6.962e-11
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)9.366e-11
Glyma.03G135300 hypothetical protein NA 1Chr03:35092248–35097578 (+)7.605e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)7.948e-13
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)5.811e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)4.496e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.327e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)5.535e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)5.534e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)5.535e-11
Glyma.05G220900 hypothetical protein NA 1Chr05:40040654–40043504 (+)4.331e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.278e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.759e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)9.916e-20
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.081e-15
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)9.876e-12
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)5.737e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)7.832e-14
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)7.832e-14
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)7.832e-14
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)7.832e-14
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)8.008e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)8.008e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)2.714e-13
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)7.158e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)1.186e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)6.024e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)8.277e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)6.024e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)6.024e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)7.922e-12
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)7.922e-12
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)7.922e-12
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)7.922e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)4.818e-13
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)2.78e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.463e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.463e-12
Glyma.19G000100 hypothetical protein AT2G32630:AT2G32630:Pentatricopeptide repeat (PPR-like) superfamily protein 1Chr19:4309–8135 (+)6.317e-11
Glyma.19G000300 hypothetical protein AT5G23450:LCBK1:long-chain base (LCB) kinase 1 1Chr19:21123–28982 (-)6.317e-11
Glyma.19G000500 hypothetical protein AT5G08400:AT5G08400:structural maintenance of chromosomes-like protein, putative (DUF3531) 1Chr19:54977–59954 (-)6.317e-11
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr19:472201–476152 (-)9.697e-14
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)2.652e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)1.985e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)4.488e-11