Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P16473

Metabolite ID
P16473
Deionized mass
308.1811 Da
Average m/z
309.1874
Average RT
12.2841
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
97
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

97 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)4.958e-19
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)2.598e-11
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)9.678e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)9.678e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)9.678e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)6.739e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)6.739e-12
Glyma.16G111100 hypothetical protein NA 2Chr16:24438458–24444801 (+)4.958e-19
Glyma.16G111800 hypothetical protein AT2G17520:IRE1A:Endoribonuclease/protein kinase IRE1-like protein 2Chr16:24720965–24731678 (-)6.842e-15
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)2.331e-11
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)2.492e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.066e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)7.998e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)4.294e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)4.294e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)4.294e-11
Glyma.05G232400 hypothetical protein AT3G24440:VRN5:Fibronectin type III domain-containing protein 1Chr05:40992124–41003814 (+)1.301e-12
Glyma.05G232600 hypothetical protein AT4G13360:AT4G13360:ATP-dependent caseinolytic (Clp) protease/crotonase family protein__AT3G24360:AT3G24360:ATP-depende… 1Chr05:41009642–41015826 (+)3.3e-12
Glyma.05G232800 hypothetical protein AT3G18500:AT3G18500:DNAse I-like superfamily protein 1Chr05:41022747–41030067 (-)3.3e-12
Glyma.05G233100 hypothetical protein NA 1Chr05:41041130–41048359 (-)3.3e-12
Glyma.05G233400 ALMT9 aluminum-activated malate transporter 9 AT3G18440:ALMT9:aluminum-activated malate transporter 9 1Chr05:41058365–41063472 (-)3.3e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)8.078e-19
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)6.736e-16
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.488e-17
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)1.505e-12
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)1.505e-12
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)1.165e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)5.034e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)3.926e-11
Glyma.07G018100 hypothetical protein NA 1Chr07:1442368–1445430 (-)2.452e-11
Glyma.07G018300 hypothetical protein AT3G27750:EMB3123:PPR containing protein 1Chr07:1457706–1458428 (+)2.452e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)2.306e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)2.307e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)8.433e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)3.585e-11
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)1.274e-12
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)8.185e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)1.599e-12
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)9.678e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)9.678e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)9.678e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)9.678e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)9.678e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)5.533e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)5.533e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)5.533e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)5.533e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.955e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)6.407e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.153e-12
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.153e-12
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.153e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)2.945e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)2.945e-12
Glyma.12G212300 hypothetical protein AT3G58710:WRKY69:WRKY DNA-binding protein 69 1Chr12:37131153–37134096 (+)1.345e-11
Glyma.12G236500 hypothetical protein NA 1Chr12:39528803–39534614 (-)7.151e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)6.739e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)6.739e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.273e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)2.248e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)2.248e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)7.566e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)7.566e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)7.566e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)5.859e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.73e-16
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)7.645e-12
Glyma.15G275100 hypothetical protein AT5G42470:AT5G42470:BRCA1-A complex subunit BRE-like protein 1Chr15:51350998–51355557 (-)3.526e-12
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)6.577e-12
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)8.228e-11
Glyma.16G105700 hypothetical protein NA 1Chr16:21404554–21412265 (-)1.103e-12
Glyma.16G105800 hypothetical protein NA 1Chr16:21409016–21412087 (-)1.103e-12
Glyma.16G106200 hypothetical protein NA 1Chr16:21463300–21469532 (+)1.103e-12
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)5.395e-14
Glyma.16G111200 hypothetical protein AT5G65930:ZWI:kinesin-like calmodulin-binding protein (ZWICHEL) 1Chr16:24455709–24466236 (+)6.842e-15
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)7.336e-18
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.083e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)5.032e-13
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)6.069e-14
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)5.479e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)2.368e-12
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr16:35831912–35835153 (+)8.805e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)5.901e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)3.005e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)2.571e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)2.571e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)3.288e-13
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)2.331e-11
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)2.598e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)8.901e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)8.901e-11
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)9.781e-13
Glyma.20G101700 hypothetical protein AT5G08580:AT5G08580:Calcium-binding EF hand family protein 1Chr20:34467936–34475476 (-)3.465e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)3.249e-13
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)5.824e-16
Glyma.20G108700 hypothetical protein AT1G09290:AT1G09290:uncharacterized protein 1Chr20:35109869–35115132 (-)4.414e-11
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)3.775e-12