Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P16472

Metabolite ID
P16472
Deionized mass
175.1387 Da
Average m/z
176.1455
Average RT
12.2837
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
110
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

110 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G143700 hypothetical protein AT3G50830:COR413-PM2:cold-regulated 413-plasma membrane 2 4Chr16:30388030–30390647 (-)4.812e-13
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 4Chr16:30652378–30659548 (+)1.017e-25
Glyma.16G147900 hypothetical protein NA 4Chr16:30864919–30872425 (+)1.32e-13
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)8.062e-11
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 3Chr18:47102746–47129707 (+)1.08e-12
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)8.925e-14
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)2.197e-15
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.831e-12
Glyma.14G176900 SGF14K 14-3-3 protein SGF14k AT1G78300:GRF2:ral regulatory factor 2 2Chr14:43637893–43642553 (+)1.555e-11
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)6.95e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)1.022e-11
Glyma.16G138800 hypothetical protein NA 2Chr16:29609432–29615000 (+)1.361e-16
Glyma.16G142300 hypothetical protein AT4G36850:AT4G36850:PQ-loop repeat family protein / transmembrane family protein 2Chr16:30086178–30091466 (-)7.662e-14
Glyma.16G144200 hypothetical protein AT3G50380:AT3G50380:vacuolar protein sorting-associated protein, putative (DUF1162) 2Chr16:30434508–30475458 (-)9.574e-13
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 2Chr16:30514629–30519598 (+)6.354e-22
Glyma.16G145100 hypothetical protein NA 2Chr16:30578388–30581421 (-)1.017e-25
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)1.657e-15
Glyma.16G147400 hypothetical protein NA 2Chr16:30817535–30821568 (+)4.47e-13
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)8.062e-11
Glyma.01G021600 hypothetical protein AT5G65540:AT5G65540:transcription initiation factor TFIID subunit 1Chr01:2189923–2194362 (-)1.214e-11
Glyma.02G203700 hypothetical protein NA 1Chr02:38909840–38915026 (+)4.877e-12
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 1Chr03:2007617–2009871 (+)2.187e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.884e-14
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)2.023e-11
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)6.453e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)1.928e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)9.354e-14
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.264e-17
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.961e-12
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)1.488e-12
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)5.276e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)4.334e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)3.752e-12
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 1Chr08:11525692–11536927 (+)3.637e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)1.406e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)1.792e-12
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)8.474e-13
Glyma.09G060600 hypothetical protein AT3G28430:AT3G28430:CLEC16A-like protein 1Chr09:5661672–5675338 (-)2.468e-11
Glyma.09G209800 hypothetical protein NA 1Chr09:43411309–43411773 (+)7.936e-12
Glyma.09G209900 hypothetical protein AT1G31930:XLG3:extra-large GTP-binding protein 3 1Chr09:43412726–43419532 (+)4.861e-11
Glyma.09G210000 hypothetical protein AT5G45620:AT5G45620:Proteasome component (PCI) domain protein 1Chr09:43422744–43428344 (-)7.936e-12
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)1.706e-12
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)4.991e-12
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)4.991e-12
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)4.991e-12
Glyma.12G098000 hypothetical protein NA 1Chr12:8432078–8439545 (+)4.48e-11
Glyma.12G098300 hypothetical protein NA 1Chr12:8458112–8459817 (+)4.48e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)3.923e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)3.923e-13
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)9.202e-12
Glyma.12G203300 hypothetical protein AT4G03430:EMB2770:pre-mRNA splicing factor-like protein 1Chr12:36371465–36377700 (-)9.411e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)4.862e-16
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.197e-15
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)2.396e-12
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)3.404e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)9.839e-12
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)9.839e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)9.839e-12
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)9.709e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)9.709e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)9.709e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)4.316e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)3.484e-11
Glyma.14G176600 hypothetical protein NA 1Chr14:43565478–43570243 (+)9.03e-12
Glyma.14G177500 hypothetical protein AT3G13620:PUT4:Amino acid permease family protein 1Chr14:43740577–43742476 (-)9.551e-11
Glyma.15G024500 hypothetical protein AT3G13810:IDD11:indeterminate(ID)-domain 11 1Chr15:1970818–1978651 (-)4.755e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)4.267e-16
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.072e-15
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)4.267e-16
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)4.267e-16
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)4.478e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.786e-13
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)6.95e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.957e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)3.733e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)3.976e-12
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)3.275e-11
Glyma.16G134500 hypothetical protein NA 1Chr16:29128092–29130458 (-)9.193e-13
Glyma.16G134900 hypothetical protein AT5G66470:AT5G66470:GTP-binding protein Era-like protein 1Chr16:29214758–29219443 (-)6.181e-14
Glyma.16G137000 hypothetical protein NA 1Chr16:29418205–29421765 (-)2.774e-11
Glyma.16G137100 hypothetical protein NA 1Chr16:29421091–29421534 (+)2.774e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)1.383e-12
Glyma.16G138300 hypothetical protein AT4G36550:AT4G36550:ARM repeat superfamily protein 1Chr16:29532421–29538165 (-)1.83e-11
Glyma.16G138400 hypothetical protein NA 1Chr16:29560913–29562163 (+)2.145e-11
Glyma.16G140700 hypothetical protein NA 1Chr16:29846716–29852078 (-)1.671e-11
Glyma.16G140800 hypothetical protein AT3G50690:AT3G50690:Leucine-rich repeat (LRR) family protein 1Chr16:29854784–29858843 (-)7.476e-13
Glyma.16G141300 hypothetical protein AT4G36710:HAM4:GRAS family transcription factor 1Chr16:29937044–29939337 (+)9.387e-19
Glyma.16G141600 hypothetical protein AT5G66710:AT5G66710:Protein kinase superfamily protein__AT3G50720:AT3G50720:Protein kinase superfamily protein 1Chr16:29970884–29978773 (-)9.387e-19
Glyma.16G142800 hypothetical protein AT2G23760:BLH4:BEL1-like homeodomain 4 1Chr16:30201467–30210093 (+)1.077e-12
Glyma.16G143100 hypothetical protein AT2G23740:SUVR5:histone-lysine N-methyltransferase SUVR5 1Chr16:30245352–30261255 (-)1.077e-12
Glyma.16G143200 hypothetical protein AT5G66600:AT5G66600:electron transporter, putative (Protein of unknown function, DUF547) 1Chr16:30273151–30278680 (+)1.077e-12
Glyma.16G143600 hypothetical protein AT3G50820:PSBO2:photosystem II subunit O-2 1Chr16:30379885–30382483 (-)1.077e-12
Glyma.16G143900 hypothetical protein NA 1Chr16:30405681–30405977 (-)4.064e-12
Glyma.16G144000 hypothetical protein AT2G23450:AT2G23450:Protein kinase superfamily protein 1Chr16:30413465–30418793 (-)4.064e-12
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)3.766e-22
Glyma.16G144300 hypothetical protein NA 1Chr16:30443185–30446450 (+)9.574e-13
Glyma.16G144600 hypothetical protein NA 1Chr16:30501031–30506501 (+)1.015e-11
Glyma.16G144900 hypothetical protein AT2G23540:AT2G23540:GDSL-like Lipase/Acylhydrolase superfamily protein 1Chr16:30549575–30553059 (+)1.132e-14
Glyma.16G145200 hypothetical protein NA 1Chr16:30586018–30588859 (-)8.099e-15
Glyma.16G145300 hypothetical protein AT2G35780:scpl26:serine carboxypeptidase-like 26__AT3G07990:SCPL27:serine carboxypeptidase-like 27 1Chr16:30604586–30608656 (+)4.165e-11
Glyma.16G145500 hypothetical protein AT2G39200:MLO12:Seven transmembrane MLO family protein 1Chr16:30630177–30636253 (+)1.568e-11
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)1.657e-15
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)4.593e-24
Glyma.16G147500 hypothetical protein NA 1Chr16:30832490–30834904 (+)8.146e-12
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)1.991e-13
Glyma.18G259000 hypothetical protein NA 1Chr18:54442402–54446789 (-)4.389e-12
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)5.801e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)5.801e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)8.896e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)8.896e-13