Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P15961

Metabolite ID
P15961
Deionized mass
280.1425 Da
Average m/z
281.1524
Average RT
12.1402
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
44
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

44 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 3Chr16:36856833–36863994 (-)7.174e-12
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 2Chr08:9065033–9071774 (-)1.429e-11
Glyma.08G117700 hypothetical protein NA 2Chr08:9080318–9084658 (-)8.809e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.039e-12
Glyma.08G181500 hypothetical protein AT4G25980:AT4G25980:peroxidase superfamily protein 2Chr08:14566842–14570376 (-)2.137e-11
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)8.484e-13
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)8.487e-13
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)8.487e-13
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)1.223e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)1.953e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.19e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)1.429e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.039e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.039e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.039e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.039e-12
Glyma.08G180900 hypothetical protein AT5G64570:XYL4:beta-D-xylosidase 4__AT5G09730:BXL3:beta-xylosidase 3 1Chr08:14516542–14521137 (+)1.177e-12
Glyma.08G182000 hypothetical protein NA 1Chr08:14601875–14604750 (+)4.844e-11
Glyma.08G182400 hypothetical protein NA 1Chr08:14625596–14626713 (+)1.298e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)6.376e-14
Glyma.08G211000 hypothetical protein NA 1Chr08:17043533–17044144 (+)3.654e-11
Glyma.08G211300 hypothetical protein AT1G52630:AT1G52630:O-fucosyltransferase family protein 1Chr08:17059736–17062962 (+)2.766e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)7.576e-13
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)8.996e-13
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)8.488e-13
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)8.488e-13
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)8.487e-13
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)8.488e-13
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)8.488e-13
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)5.25e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)1.807e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)6.337e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)7.588e-11
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)7.588e-11
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)4.848e-11
Glyma.16G209000 hypothetical protein NA 1Chr16:36841786–36845498 (-)6.345e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)2.378e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)2.378e-12
Glyma.18G052100 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr18:4503897–4512049 (+)5.456e-13
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)7.068e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.294e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.293e-12
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)7.148e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)5.47e-14