Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P15957

Metabolite ID
P15957
Deionized mass
284.0806 Da
Average m/z
285.0886
Average RT
12.1392
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
92
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

92 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 4Chr16:35831912–35835153 (+)3.357e-16
Glyma.16G196900 hypothetical protein NA 4Chr16:35841279–35846894 (-)1.489e-14
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)1.059e-12
Glyma.01G126800 hypothetical protein NA 2Chr01:43602195–43612710 (+)1.014e-11
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)1.035e-13
Glyma.01G117000 hypothetical protein NA 1Chr01:40366281–40370122 (+)5.908e-13
Glyma.01G117200 hypothetical protein NA 1Chr01:40497525–40501709 (-)5.908e-13
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)5.631e-13
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)5.334e-16
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)1.377e-13
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)3.885e-15
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)3.049e-14
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)1.05e-12
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)1.05e-12
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)1.05e-12
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)1.05e-12
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)1.05e-12
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)1.05e-12
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)1.05e-12
Glyma.01G126900 hypothetical protein NA 1Chr01:43632082–43635399 (+)1.014e-11
Glyma.02G115700 hypothetical protein AT1G26500:AT1G26500:Pentatricopeptide repeat (PPR) superfamily protein 1Chr02:11265298–11266785 (-)5.747e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)7.692e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)6.075e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)1.849e-13
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.687e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.616e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)9.047e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)9.046e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)9.047e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)8.022e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.579e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.686e-15
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)5.495e-11
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)1.819e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)1.908e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)4.38e-14
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)1.764e-11
Glyma.09G057400 hypothetical protein AT5G57320:VLN5:actin filament bundling protein P-115-ABP protein 1Chr09:5173554–5193820 (-)5.919e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)3.051e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.147e-15
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.056e-14
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)6.27e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)6.27e-13
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)6.27e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)6.27e-13
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.336e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.884e-15
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)4.044e-12
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)1.879e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)2.643e-13
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)2.643e-13
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)2.643e-13
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)2.643e-13
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)8.45e-11
Glyma.11G241000 hypothetical protein AT4G39960:AT4G39960:Molecular chaperone Hsp40/DnaJ family protein 1Chr11:33526493–33531210 (+)6.785e-12
Glyma.11G241300 hypothetical protein AT4G39990:RABA4B:RAB GTPase homolog A4B 1Chr11:33552339–33555298 (+)4.577e-13
Glyma.11G241400 hypothetical protein AT4G40000:AT4G40000:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr11:33556332–33563163 (-)1.248e-11
Glyma.11G241900 hypothetical protein NA 1Chr11:33589346–33594428 (-)1.248e-11
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)2.958e-13
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)4.434e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)4.434e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.279e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.116e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.279e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.279e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)4.574e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)4.364e-14
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)9.395e-12
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)6.408e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)1.649e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)1.648e-11
Glyma.16G165300 hypothetical protein NA 1Chr16:32447317–32449688 (-)8.242e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.808e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)2.878e-15
Glyma.16G189500 hypothetical protein NA 1Chr16:35202920–35206459 (-)1.485e-12
Glyma.16G194000 hypothetical protein AT3G48900:AT3G48900:single-stranded DNA endonuclease family protein 1Chr16:35625666–35634395 (-)2.995e-11
Glyma.16G194100 hypothetical protein NA 1Chr16:35633570–35637343 (+)2.995e-11
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)1.069e-12
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)5.338e-15
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)2.954e-12
Glyma.17G258700 hypothetical protein AT4G24190:SHD:Chaperone protein htpG family protein 1Chr17:41280124–41284980 (-)7.599e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)5.04e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)1.45e-12
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)1.627e-11
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)1.612e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)5.226e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)5.226e-13
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.99e-12
Glyma.20G034000 hypothetical protein AT2G03060:AGL30:AGAMOUS-like 30 1Chr20:4655939–4664465 (-)6.468e-14
Glyma.20G107700 hypothetical protein AT2G16860:AT2G16860:GCIP-interacting family protein 1Chr20:35033414–35036538 (+)3.441e-11
Glyma.20G109000 hypothetical protein AT4G32640:AT4G32640:Sec23/Sec24 protein transport family protein__AT3G44340:CEF:uncharacterized protein 1Chr20:35134138–35152085 (-)7.472e-11
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)2.821e-13