Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P15563

Metabolite ID
P15563
Deionized mass
563.2211 Da
Average m/z
564.2282
Average RT
12.0358
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
100
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

100 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)2.544e-15
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)2.116e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 3Chr16:36806718–36809299 (+)2.563e-14
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)2.316e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 3Chr19:1134716–1143232 (+)9.683e-12
Glyma.09G018700 hypothetical protein NA 2Chr09:1470411–1472672 (-)2.044e-15
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)2.021e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.445e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.445e-14
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)6.983e-12
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 2Chr16:36871978–36878151 (-)1.95e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)4.411e-12
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)3.806e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.096e-14
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)1.026e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.137e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)7.268e-12
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)3.663e-11
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)4.899e-11
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)7.681e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)1.013e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.679e-15
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)3.915e-15
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)8.755e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.29e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)8.226e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.241e-11
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)4.781e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)9.956e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)6.724e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)6.724e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)5.226e-11
Glyma.06G291300 hypothetical protein NA 1Chr06:48016841–48019943 (+)1.257e-11
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 1Chr06:48170133–48173010 (-)3.156e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)7.128e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)7.106e-12
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)4.421e-11
Glyma.07G018100 hypothetical protein NA 1Chr07:1442368–1445430 (-)3.726e-11
Glyma.07G018300 hypothetical protein AT3G27750:EMB3123:PPR containing protein 1Chr07:1457706–1458428 (+)3.726e-11
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)8.343e-11
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)5.362e-11
Glyma.09G018600 hypothetical protein NA 1Chr09:1460075–1465805 (-)5.524e-11
Glyma.09G019800 VAMP721D vesicle-associated membrane protein 721d NA 1Chr09:1540660–1547761 (+)1.449e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)5.919e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.181e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.595e-12
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)3.929e-11
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)3.928e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.338e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.338e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.338e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.338e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.039e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)8.857e-13
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)1.705e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)1.155e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)2.727e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)2.727e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)2.727e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)2.727e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)7.798e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)7.798e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)7.798e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)4.021e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)4.021e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)4.11e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)5.355e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)2.116e-12
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)4.491e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.445e-14
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.445e-14
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.16e-14
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)2.979e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)4.34e-12
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)6.638e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.735e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.141e-14
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.735e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.735e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)4.879e-12
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)8.634e-12
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)8.634e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.92e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)3.748e-12
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)9.769e-12
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)6.1e-11
Glyma.16G138500 hypothetical protein NA 1Chr16:29564872–29566190 (+)4.077e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)6.693e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)2.068e-14
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)4.055e-12
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)2.235e-13
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)2.316e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)7.606e-13
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)7.606e-13
Glyma.17G135100 hypothetical protein AT1G62840:AT1G62840:ankyrin repeat/KH domain protein (DUF1442) 1Chr17:10870710–10872285 (+)3.356e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)5.737e-12
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 1Chr19:1148510–1149495 (+)4.464e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.14e-15
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.141e-15
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)1.228e-11