Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P14540

Metabolite ID
P14540
Deionized mass
136.0876 Da
Average m/z
137.0944
Average RT
11.7844
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
107
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

107 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 2Chr08:9435391–9437279 (+)8.859e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)8.859e-12
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)2.846e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)2.846e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)2.846e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)2.847e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)1.371e-13
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.917e-16
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.917e-16
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.269e-15
Glyma.15G263500 hypothetical protein AT1G79440:ALDH5F1:aldehyde dehydrogenase 5F1 2Chr15:49664672–49682418 (+)4.253e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)4.181e-11
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)2.127e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)7.286e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)8.548e-11
Glyma.20G009700 hypothetical protein AT2G15820:OTP51:endonuclease 2Chr20:847971–851447 (+)2.446e-11
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)2.912e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)2.297e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)2.297e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.466e-14
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)1.152e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)6.231e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.642e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)7.649e-11
Glyma.04G220200 hypothetical protein AT5G64940:ATH13:ABC2 homolog 13 1Chr04:49075208–49089579 (+)6.729e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)4.434e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.605e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.624e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.624e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.624e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.078e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.335e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)9.939e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)5.524e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)5.524e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)4.781e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)8.804e-11
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)5.766e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)8.859e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)8.859e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)8.859e-12
Glyma.09G059600 hypothetical protein AT4G30010:AT4G30010:ATP-dependent RNA helicase 1Chr09:5504630–5507434 (+)9.95e-13
Glyma.09G059700 hypothetical protein AT4G29940:PRHA:pathosis related homeodomain protein A 1Chr09:5513108–5520158 (+)9.949e-13
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)9.95e-13
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)3.506e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.361e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)6.421e-12
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)1.727e-13
Glyma.09G187700 hypothetical protein AT3G24420:AT3G24420:alpha/beta-Hydrolases superfamily protein 1Chr09:41217358–41221592 (-)4.54e-13
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)2.846e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)2.846e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)2.846e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)2.846e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)2.846e-11
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)7.945e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.627e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.627e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.627e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.627e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.208e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.313e-12
Glyma.10G082200 hypothetical protein NA 1Chr10:9967027–9970045 (-)6.76e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)8.653e-11
Glyma.11G061800 hypothetical protein NA 1Chr11:4632831–4633552 (+)2.154e-12
Glyma.11G062400 hypothetical protein AT4G36860:AT4G36860:LIM domain-containing protein 1Chr11:4720040–4726569 (+)6.638e-12
Glyma.11G065000 hypothetical protein AT4G36730:GBF1:G-box binding factor 1 1Chr11:4916855–4922192 (+)1.962e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.166e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.166e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)3.022e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)3.022e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)5.17e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)5.17e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)5.092e-14
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)4.53e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)4.872e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)4.872e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.371e-13
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)6.477e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)6.477e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.917e-16
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)4.991e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)8.973e-13
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)5.194e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)6.804e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)6.804e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)3.397e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)8.389e-13
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)7.834e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)3.216e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)7.922e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)3.628e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)9.538e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)3.445e-13
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)9.795e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)9.795e-11
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)2.127e-11
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)2.772e-12
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)7.83e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)7.83e-12
Glyma.18G231300 hypothetical protein AT3G61310:AT3G61310:AT hook motif DNA-binding family protein 1Chr18:51979095–51987062 (-)2.245e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)8.7e-12
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)1.619e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)7.286e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.134e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.134e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)9.622e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)2.351e-11