Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P13978

Metabolite ID
P13978
Deionized mass
305.1284 Da
Average m/z
306.1370
Average RT
11.6223
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
58
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

58 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)2.057e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)7.516e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.247e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.247e-14
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 2Chr14:5675792–5680343 (+)2.177e-14
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.206e-13
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)1.199e-12
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)1.457e-11
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 1Chr03:2007617–2009871 (+)9.64e-12
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)8.313e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)1.348e-13
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)2.784e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)4.811e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)5.076e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.223e-12
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)7.246e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.671e-17
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.671e-17
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)2.021e-15
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)6.618e-14
Glyma.06G136200 hypothetical protein AT5G54170:AT5G54170:Polyketide cyclase/dehydrase and lipid transport superfamily protein 1Chr06:11160066–11162505 (-)1.709e-12
Glyma.07G075000 hypothetical protein AT5G60990:AT5G60990:DEA(D/H)-box RNA helicase family protein 1Chr07:6821674–6829551 (-)7.112e-11
Glyma.07G075300 hypothetical protein NA 1Chr07:6843882–6845602 (-)7.111e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)3.871e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)2.055e-13
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.365e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.161e-12
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)2.054e-13
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)1.63e-14
Glyma.11G237700 hypothetical protein NA 1Chr11:33203513–33233708 (-)7.987e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)4.64e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)7.516e-12
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)1.19e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)8.056e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)8.056e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.247e-14
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)1.641e-15
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)3.897e-13
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)5.528e-15
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)6.911e-13
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)3.975e-11
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)3.975e-11
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)1.616e-15
Glyma.14G077100 hypothetical protein AT5G42610:AT5G42610:calcium uniporter (DUF607) 1Chr14:6486139–6488935 (+)9.855e-12
Glyma.14G077200 hypothetical protein AT5G42620:AT5G42620:metalloendopeptidase / zinc ion binding protein 1Chr14:6498564–6506068 (+)9.855e-12
Glyma.14G077300 hypothetical protein AT1G75040:PR5:pathosis-related protein 5 1Chr14:6508609–6520744 (-)9.855e-12
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)5.366e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)5.366e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)6.797e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)2.933e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.008e-11
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)1.962e-11
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)2.318e-11
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)2.318e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)1.199e-12
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1134716–1143232 (+)9.522e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.405e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.404e-13