Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P13824

Metabolite ID
P13824
Deionized mass
367.1509 Da
Average m/z
368.1590
Average RT
11.5749
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
160
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

160 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)1.038e-16
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.16e-14
Glyma.07G068800 hypothetical protein NA 3Chr07:6211775–6221107 (-)3.363e-13
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 3Chr18:47102746–47129707 (+)1.126e-11
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 2Chr03:2240686–2246512 (-)7.656e-12
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)9.169e-13
Glyma.07G058300 hypothetical protein AT1G01450:AT1G01450:Protein kinase superfamily protein 2Chr07:5208488–5211264 (-)3.456e-12
Glyma.07G068300 hypothetical protein AT5G62980:FOLB2:Dihydroneopterin aldolase__AT3G11750:FOLB1:Dihydroneopterin aldolase 2Chr07:6169729–6172231 (+)7.76e-13
Glyma.07G068600 hypothetical protein NA 2Chr07:6192764–6197166 (+)5.448e-13
Glyma.08G117700 hypothetical protein NA 2Chr08:9080318–9084658 (-)2.945e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 2Chr08:9435391–9437279 (+)7.116e-16
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)7.116e-16
Glyma.09G237900 hypothetical protein NA 2Chr09:45960580–45964267 (+)6.225e-14
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)5.637e-12
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 2Chr10:2485817–2497071 (-)3.566e-17
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)3.404e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)3.291e-12
Glyma.14G211800 hypothetical protein AT1G66080:AT1G66080:hikeshi-like protein 2Chr14:47664851–47670630 (+)3.846e-12
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)9.329e-15
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)2.299e-16
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 2Chr19:1148510–1149495 (+)1.314e-14
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 2Chr19:1155711–1161298 (-)1.643e-14
Glyma.19G012300 hypothetical protein NA 2Chr19:1165111–1173031 (-)1.643e-14
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.16e-14
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)2.516e-16
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)3.191e-15
Glyma.01G168800 hypothetical protein AT1G24430:AT1G24430:HXXXD-type acyl-transferase family protein 1Chr01:50633986–50636589 (+)4.736e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)1.548e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)7.193e-12
Glyma.03G013500 hypothetical protein AT1G01700:ROPGEF2:RHO guanyl-nucleotide exchange factor 2 1Chr03:1370977–1375024 (+)5.671e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)1.353e-11
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 1Chr03:1875182–1876855 (+)9.487e-11
Glyma.03G020800 hypothetical protein AT3G61050:NTMC2T4:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr03:2124895–2135692 (-)1.477e-11
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 1Chr03:2202325–2234931 (+)1.027e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)1.732e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)4.476e-14
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.889e-12
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)2.561e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)5.463e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)8.753e-14
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)6.38e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)8.335e-14
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.692e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.414e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.616e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)7.633e-13
Glyma.06G078400 hypothetical protein AT4G31290:AT4G31290:ChaC-like family protein 1Chr06:6068728–6071360 (+)1.65e-11
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)3.951e-12
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)1.038e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)1.038e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)1.038e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)7.257e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.501e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.501e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)1.848e-12
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)2.61e-11
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)2.496e-12
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)1.021e-11
Glyma.07G058400 hypothetical protein AT3G25500:AFH1:formin homology 1 1Chr07:5217085–5221305 (-)3.751e-11
Glyma.07G067600 hypothetical protein NA 1Chr07:6091311–6093654 (-)1.133e-11
Glyma.07G068000 hypothetical protein AT3G61460:BRH1: 1Chr07:6128862–6129740 (+)4.179e-12
Glyma.07G068100 hypothetical protein NA 1Chr07:6135478–6137135 (+)9.727e-11
Glyma.07G068200 hypothetical protein AT4G00310:EDA8:Putative membrane lipoprotein 1Chr07:6146155–6148036 (-)7.413e-13
Glyma.07G068400 hypothetical protein AT1G29320:AT1G29320:Transducin/WD40 repeat-like superfamily protein 1Chr07:6173172–6180430 (-)5.448e-13
Glyma.07G068700 hypothetical protein AT2G46060:AT2G46060:transmembrane protein-like protein 1Chr07:6200187–6208590 (+)3.363e-13
Glyma.07G069100 hypothetical protein NA 1Chr07:6246145–6250192 (+)5.448e-13
Glyma.07G071800 hypothetical protein AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein 1Chr07:6523253–6526707 (+)1.281e-13
Glyma.07G087700 hypothetical protein AT3G24495:MSH7:MUTS homolog 7 1Chr07:8111751–8121053 (+)5.273e-11
Glyma.07G209600 hypothetical protein NA 1Chr07:38037644–38043272 (+)3.173e-12
Glyma.08G112600 hypothetical protein NA 1Chr08:8660670–8663379 (-)2.541e-11
Glyma.08G112700 hypothetical protein NA 1Chr08:8661027–8661191 (+)2.541e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)7.116e-16
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)7.116e-16
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)7.116e-16
Glyma.08G137600 hypothetical protein AT4G39780:AT4G39780:Integrase-type DNA-binding superfamily protein 1Chr08:10551821–10553620 (-)4.319e-12
Glyma.08G182400 hypothetical protein NA 1Chr08:14625596–14626713 (+)9.235e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.704e-11
Glyma.08G336900 hypothetical protein AT1G55730:CAX5:cation exchanger 5 1Chr08:45376142–45387404 (-)3.268e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)5.968e-11
Glyma.09G133800 hypothetical protein NA 1Chr09:33268295–33269240 (+)9.212e-11
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)7.247e-11
Glyma.09G236000 hypothetical protein AT3G01150:PTB1:polypyrimidine tract-binding protein 1 1Chr09:45856580–45862836 (+)2.385e-11
Glyma.09G237700 hypothetical protein AT4G21680:NRT1.8:NITRATE TRANSPORTER 1.8 1Chr09:45948581–45953681 (-)3.261e-11
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)2.111e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)2.16e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)2.16e-11
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)5.139e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)1.939e-11
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)3.566e-17
Glyma.10G028600 hypothetical protein NA 1Chr10:2487313–2489838 (+)1.428e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.987e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.987e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.987e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.987e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.077e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.583e-13
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)1.928e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)2.929e-12
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)9.578e-13
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)6.301e-13
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)6.301e-13
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)6.301e-13
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)6.301e-13
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.766e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.766e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.766e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)3.404e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)5.786e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)4.988e-16
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)1.042e-14
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)6.764e-15
Glyma.14G071600 hypothetical protein AT1G27620:AT1G27620:HXXXD-type acyl-transferase family protein 1Chr14:6016839–6019954 (+)5.57e-11
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)7.212e-12
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)7.212e-12
Glyma.14G072200 Ipk1 AT5G42810:IPK1:inositol-pentakisphosphate 2-kinase 1__AT1G22100:AT1G22100:Inositol-pentakisphosphate 2-kinase family pr… 1Chr14:6059598–6063755 (-)7.126e-14
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)1.835e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)7.985e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)3.291e-12
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)3.081e-11
Glyma.14G211900 hypothetical protein AT5G16560:KAN:Homeodomain-like superfamily protein 1Chr14:47690466–47697203 (+)3.815e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)4.919e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)9.494e-12
Glyma.16G031600 hypothetical protein NA 1Chr16:2964569–2985013 (+)9.717e-11
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)4.862e-11
Glyma.16G115800 hypothetical protein NA 1Chr16:25719040–25728740 (-)1.556e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)2.545e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)2.877e-11
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)4.393e-11
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)7.147e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)8.159e-11
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)2.678e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)8.728e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)4.264e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)4.264e-11
Glyma.17G038400 hypothetical protein AT3G17330:ECT6:evolutionarily conserved C-terminal region 6 1Chr17:2836787–2841979 (-)2.416e-11
Glyma.17G038500 hypothetical protein NA 1Chr17:2843533–2853547 (-)2.416e-11
Glyma.17G039200 hypothetical protein NA 1Chr17:2903795–2919460 (+)9.071e-11
Glyma.17G039300 hypothetical protein AT4G15230:ABCG30:pleiotropic drug resistance 2__AT4G15233:ABCG42:ABC-2 and Plant PDR ABC-type transporter family protei… 1Chr17:2918657–2932426 (-)3.261e-11
Glyma.17G199600 hypothetical protein AT2G45330:emb1067:RNA 2'-phosphotransferase, Tpt1 / KptA family 1Chr17:31731965–31738073 (+)1.733e-11
Glyma.17G200400 hypothetical protein NA 1Chr17:31864566–31869426 (-)1.733e-11
Glyma.17G201000 hypothetical protein AT3G49600:UBP26:ubiquitin-specific protease 26 1Chr17:31946807–31956876 (-)1.733e-11
Glyma.17G205900 hypothetical protein NA 1Chr17:33578345–33582235 (-)2.878e-11
Glyma.17G206000 hypothetical protein NA 1Chr17:33582328–33583013 (-)2.878e-11
Glyma.17G206100 hypothetical protein NA 1Chr17:33612472–33622199 (-)2.878e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)7.463e-14
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)7.234e-11
Glyma.18G106600 hypothetical protein NA 1Chr18:11947553–11951868 (+)2.906e-11
Glyma.18G227400 hypothetical protein AT2G45720:AT2G45720:ARM repeat superfamily protein 1Chr18:51650951–51654636 (-)2.27e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)2.76e-12
Glyma.19G027700 hypothetical protein AT5G15440:EDL1:EID1-like 1 1Chr19:3471299–3475645 (+)8.709e-12
Glyma.19G028100 hypothetical protein AT3G01040:GAUT13:galacturonosyltransferase 13 1Chr19:3511914–3519141 (+)3.853e-12
Glyma.19G030100 hypothetical protein NA 1Chr19:3732644–3733945 (+)3.808e-11
Glyma.19G030500 GmAT133 NA 1Chr19:3779017–3781453 (-)3.808e-11
Glyma.19G031100 hypothetical protein AT3G02170:LNG2:longifolia2 1Chr19:3839225–3845784 (-)8.303e-14
Glyma.19G031200 hypothetical protein NA 1Chr19:3870532–3874170 (-)8.934e-13
Glyma.19G032500 hypothetical protein NA 1Chr19:4140729–4141955 (-)1.832e-12
Glyma.19G102000 ICE2 AT3G26744:ICE1:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr19:34998146–35001862 (+)2.552e-11
Glyma.19G102200 hypothetical protein AT2G31410:AT2G31410:coiled-coil protein 1Chr19:35024582–35025690 (+)2.552e-11
Glyma.19G119100 hypothetical protein AT3G03650:EDA5:Exostosin family protein 1Chr19:37668759–37672434 (+)1.29e-12
Glyma.19G119200 hypothetical protein AT3G03630:CS26:cysteine synthase 26 1Chr19:37677773–37683394 (+)1.08e-11