Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P13464

Metabolite ID
P13464
Deionized mass
693.2310 Da
Average m/z
694.2329
Average RT
11.4519
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
116
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

116 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)1.61e-14
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)7.993e-13
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)2.73e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)1.516e-13
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)1.516e-13
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)6.787e-12
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)3.048e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 2Chr05:32021521–32025767 (-)7.758e-15
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)2.672e-12
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)2.672e-12
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)2.672e-12
Glyma.10G272800 hypothetical protein AT1G25350:OVA9:glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS 2Chr10:49530856–49539222 (+)2.443e-12
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)8.345e-14
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)9.169e-15
Glyma.18G052300 hypothetical protein NA 2Chr18:4521958–4525815 (+)3.274e-12
Glyma.01G021600 hypothetical protein AT5G65540:AT5G65540:transcription initiation factor TFIID subunit 1Chr01:2189923–2194362 (-)1.5e-11
Glyma.01G021700 hypothetical protein NA 1Chr01:2197811–2200232 (+)2.774e-11
Glyma.01G022000 hypothetical protein NA 1Chr01:2209688–2210849 (-)2.774e-11
Glyma.01G022200 hypothetical protein NA 1Chr01:2212834–2213622 (+)2.774e-11
Glyma.01G022300 hypothetical protein NA 1Chr01:2215383–2217438 (+)8.956e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)4.571e-12
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)4.235e-11
Glyma.02G293100 hypothetical protein AT3G20800:AT3G20800:Cell differentiation, Rcd1-like protein 1Chr02:47183443–47188007 (-)8.349e-12
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)1.212e-11
Glyma.03G017800 hypothetical protein AT4G00770:TRM9:DUF4378 domain protein 1Chr03:1780719–1783735 (+)3.565e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)4.32e-11
Glyma.03G041500 hypothetical protein NA 1Chr03:5249601–5251509 (-)5.342e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)1.774e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)2.819e-11
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)3.116e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)2.255e-13
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)8.781e-14
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.307e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)7.758e-15
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)3.731e-16
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)6.359e-16
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)6.359e-16
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)6.359e-16
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)1.116e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)6.813e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.327e-19
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)6.287e-16
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)3.856e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)3.856e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)3.856e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.322e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.322e-11
Glyma.06G175200 SEOd NA 1Chr06:14822478–14829186 (-)3.671e-12
Glyma.06G289300 hypothetical protein AT2G20570:GPRI1:GBF's pro-rich region-interacting factor 1 1Chr06:47797509–47802933 (+)9.359e-12
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)1.172e-13
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)1.74e-13
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)1.172e-13
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)1.172e-13
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)1.74e-13
Glyma.06G292400 hypothetical protein AT4G28320:MAN5:Glycosyl hydrolase superfamily protein 1Chr06:48130296–48134955 (+)1.045e-14
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 1Chr06:48170133–48173010 (-)8.634e-13
Glyma.06G293600 hypothetical protein AT1G03650:AT1G03650:Acyl-CoA N-acyltransferases (NAT) superfamily protein 1Chr06:48251255–48252791 (+)3.299e-11
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)3.793e-12
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)3.793e-12
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)3.885e-15
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)2.439e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)3.288e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)5.941e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)2.672e-12
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)2.672e-12
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)2.672e-12
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)1.411e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)2.672e-12
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)2.672e-12
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)4.542e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)6.36e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.877e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.877e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.877e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.877e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.143e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)3.099e-14
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)3.099e-14
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)8.929e-15
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)8.929e-15
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)6.084e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)6.084e-11
Glyma.13G051000 hypothetical protein AT1G19920:APS2:Pseudouridine synthase/archaeosine transglycosylase-like family protein 1Chr13:14742455–14747878 (-)3.183e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)1.007e-14
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)1.007e-14
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)1.007e-14
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)5.446e-15
Glyma.13G204200 hypothetical protein NA 1Chr13:31822330–31826011 (+)5.124e-11
Glyma.13G291900 hypothetical protein NA 1Chr13:39194019–39195665 (-)1.948e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)8.986e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)7.696e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)7.609e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.197e-12
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)3.329e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)3.299e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)1.61e-14
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)3.4e-13
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)2.73e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)2.73e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)2.73e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)2.73e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)8.04e-12
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)4.984e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)1.516e-13
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)1.516e-13
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)4.794e-12
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)6.787e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)1.036e-14
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.036e-14
Glyma.17G135100 hypothetical protein AT1G62840:AT1G62840:ankyrin repeat/KH domain protein (DUF1442) 1Chr17:10870710–10872285 (+)2.871e-11
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)7.813e-13
Glyma.18G052100 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr18:4503897–4512049 (+)1.725e-11
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)4.135e-11
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)9.4e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)6.609e-12
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)3.404e-11