Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P13412

Metabolite ID
P13412
Deionized mass
336.1283 Da
Average m/z
337.1370
Average RT
11.4404
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
89
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

89 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)8.81e-14
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 2Chr03:1875182–1876855 (+)1.473e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 2Chr08:9435391–9437279 (+)4.194e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)4.194e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)3.018e-13
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)4.214e-11
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)1.194e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)3.505e-14
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 2Chr19:1148510–1149495 (+)9.058e-13
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)2.953e-13
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)2.953e-13
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)6.894e-12
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)2.533e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)1.248e-11
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)5.509e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)6.03e-13
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.163e-14
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.622e-12
Glyma.03G073300 hypothetical protein AT1G79210:AT1G79210:N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein 1Chr03:17770362–17785644 (+)5.81e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)4.753e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)3.605e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)8.012e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.774e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)5.367e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)5.367e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)6.968e-11
Glyma.06G305100 hypothetical protein NA 1Chr06:49413291–49417661 (-)1.601e-11
Glyma.06G305200 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 1Chr06:49420013–49426780 (-)8.68e-13
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)3.52e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)4.885e-11
Glyma.07G075000 hypothetical protein AT5G60990:AT5G60990:DEA(D/H)-box RNA helicase family protein 1Chr07:6821674–6829551 (-)1.57e-11
Glyma.07G075300 hypothetical protein NA 1Chr07:6843882–6845602 (-)1.57e-11
Glyma.07G078300 hypothetical protein NA 1Chr07:7150800–7154478 (-)5.305e-11
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 1Chr07:9523110–9526319 (+)8.822e-11
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)1.147e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)1.431e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)4.194e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)4.194e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)4.194e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)2.521e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)5.755e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.464e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.881e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)9.025e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)4.755e-12
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)6.61e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)6.384e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.171e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.171e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.353e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.353e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.337e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.337e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.698e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.534e-12
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)2.534e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)2.534e-12
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)2.057e-11
Glyma.13G185400 hypothetical protein NA 1Chr13:29936606–29937420 (+)1.863e-11
Glyma.14G013500 hypothetical protein AT4G25434:NUDT10:nudix hydrolase homolog 10 1Chr14:1009519–1014238 (+)3.275e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)3.405e-13
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)3.024e-12
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)1.998e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)4.279e-13
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.443e-12
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)2.635e-12
Glyma.14G077100 hypothetical protein AT5G42610:AT5G42610:calcium uniporter (DUF607) 1Chr14:6486139–6488935 (+)5.924e-11
Glyma.14G077200 hypothetical protein AT5G42620:AT5G42620:metalloendopeptidase / zinc ion binding protein 1Chr14:6498564–6506068 (+)5.924e-11
Glyma.14G077300 hypothetical protein AT1G75040:PR5:pathosis-related protein 5 1Chr14:6508609–6520744 (-)5.924e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)5.885e-12
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)4.214e-11
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)2.324e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)9.684e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.488e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)5.22e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)9.51e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)7.827e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)4.534e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)8.399e-11
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)1.194e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)2.7e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)2.7e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)1.611e-12
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)4.041e-12
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)3.505e-14
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.724e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.724e-13
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)9.454e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)4.3e-12