Overview Annotation GWAS Evidence Associated genes

P13378

Metabolite ID
P13378
Deionized mass
448.1096 Da
Average m/z
449.1147
Average RT
11.4315
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
159
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

159 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 5Chr16:36856833–36863994 (-)1.406e-13
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)2.775e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)2.567e-12
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 3Chr16:35831912–35835153 (+)5.475e-12
Glyma.16G196900 hypothetical protein NA 3Chr16:35841279–35846894 (-)3.39e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 2Chr03:2423540–2428634 (-)3.751e-14
Glyma.06G209300 hypothetical protein NA 2Chr06:20573671–20581076 (-)3.021e-12
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)4.11e-14
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)5.379e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)4.372e-17
Glyma.12G212300 hypothetical protein AT3G58710:WRKY69:WRKY DNA-binding protein 69 2Chr12:37131153–37134096 (+)8.529e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)7.915e-17
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)7.915e-17
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)4.384e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)2.775e-11
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)3.654e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)8.559e-13
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)5.925e-13
Glyma.02G109400 hypothetical protein NA 1Chr02:10495046–10497626 (-)7.266e-11
Glyma.02G109900 hypothetical protein AT2G03150:emb1579:ATP/GTP-binding protein family 1Chr02:10547851–10557930 (+)7.266e-11
Glyma.02G113000 hypothetical protein AT1G69370:CM3:chorismate mutase 3 1Chr02:10939096–10941983 (-)2.077e-13
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)8.731e-11
Glyma.02G253300 hypothetical protein NA 1Chr02:44063023–44065910 (-)1.348e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)7.041e-12
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)5.452e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.498e-15
Glyma.03G031700 hypothetical protein AT1G79600:AT1G79600:Protein kinase superfamily protein 1Chr03:3567906–3572939 (-)1.11e-11
Glyma.03G035500 hypothetical protein NA 1Chr03:4289118–4294184 (+)4.642e-11
Glyma.03G136000 hypothetical protein NA 1Chr03:35138670–35188160 (-)5.675e-11
Glyma.03G136100 hypothetical protein NA 1Chr03:35199503–35203392 (-)8.146e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)3.358e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)7.299e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.426e-17
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.616e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.083e-11
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)2.571e-12
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)2.571e-12
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)2.571e-12
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)2.743e-12
Glyma.06G204200 hypothetical protein AT5G08050:AT5G08050:wiskott-aldrich syndrome family protein, putative (DUF1118) 1Chr06:19170925–19173352 (+)8.898e-11
Glyma.06G207900 hypothetical protein NA 1Chr06:20278974–20282107 (-)5.022e-12
Glyma.06G208000 hypothetical protein AT1G74000:SS3:strictosidine synthase 3 1Chr06:20286288–20288769 (+)5.022e-12
Glyma.06G208900 hypothetical protein NA 1Chr06:20515068–20521900 (-)5.022e-12
Glyma.06G209400 hypothetical protein NA 1Chr06:20622369–20629712 (+)5.022e-12
Glyma.06G209600 hypothetical protein AT1G48960:AT1G48960:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:20638577–20641470 (+)5.022e-12
Glyma.06G210000 hypothetical protein NA 1Chr06:20706632–20708144 (-)5.022e-12
Glyma.06G210100 hypothetical protein NA 1Chr06:20725481–20728890 (-)5.022e-12
Glyma.06G210400 hypothetical protein AT1G03280:AT1G03280:Transcription factor TFIIE, alpha subunit 1Chr06:20768340–20778709 (-)5.022e-12
Glyma.06G210900 hypothetical protein AT3G24330:AT3G24330:O-Glycosyl hydrolases family 17 protein 1Chr06:20942818–20945744 (+)5.022e-12
Glyma.06G211500 hypothetical protein AT5G19950:AT5G19950:tudor domain protein (DUF1767) 1Chr06:21104409–21114116 (-)5.022e-12
Glyma.06G211700 hypothetical protein NA 1Chr06:21226061–21226529 (-)1.103e-11
Glyma.06G211800 hypothetical protein NA 1Chr06:21237649–21239875 (+)1.103e-11
Glyma.06G213600 hypothetical protein NA 1Chr06:21713618–21726865 (+)1.103e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)4.257e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)2.084e-12
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)2.195e-11
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)1.306e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)7.918e-11
Glyma.07G075000 hypothetical protein AT5G60990:AT5G60990:DEA(D/H)-box RNA helicase family protein 1Chr07:6821674–6829551 (-)3.611e-11
Glyma.07G075300 hypothetical protein NA 1Chr07:6843882–6845602 (-)3.611e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)5.333e-14
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)8.958e-12
Glyma.09G057400 hypothetical protein AT5G57320:VLN5:actin filament bundling protein P-115-ABP protein 1Chr09:5173554–5193820 (-)1.264e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)9.984e-13
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)2.141e-12
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)2.178e-12
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)2.644e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)6.771e-15
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)8.797e-14
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.711e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.711e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.711e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.711e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.414e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.342e-11
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)1.071e-11
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)2.347e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)1.694e-12
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)5.99e-14
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)1.528e-13
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)1.528e-13
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)1.528e-13
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)1.528e-13
Glyma.11G090300 hypothetical protein AT4G19190:AT4G19190:zinc knuckle (CCHC-type) family protein 1Chr11:6849007–6855564 (+)1.657e-13
Glyma.11G110300 hypothetical protein AT2G16530:AT2G16530:3-oxo-5-alpha-steroid 4-dehydrogenase family protein__AT1G72590:AT1G72590:3-oxo-5-alpha-steroid 4-d… 1Chr11:8402144–8406496 (-)5.913e-11
Glyma.11G179000 hypothetical protein AT2G27230:LHW:transcription factor-like protein 1Chr11:24412040–24417199 (+)4.509e-11
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)8.799e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.976e-16
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.976e-16
Glyma.12G109600 hypothetical protein AT4G03420:AT4G03420: 1Chr12:10403574–10408026 (+)9.676e-11
Glyma.12G109700 hypothetical protein AT1G03620:AT1G03620:ELMO/CED-12 family protein 1Chr12:10419034–10424716 (-)9.676e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)2.92e-13
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)2.92e-13
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.246e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.246e-13
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)7.988e-13
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.157e-13
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)4.372e-17
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)1.194e-14
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)4.425e-13
Glyma.12G212800 hypothetical protein NA 1Chr12:37179924–37185798 (-)5.351e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)6.578e-14
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)2.567e-12
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)3.782e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.261e-15
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.261e-15
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)7.915e-17
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)9.326e-12
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)9.326e-12
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)9.326e-12
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)6.304e-13
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)2.246e-12
Glyma.14G077100 hypothetical protein AT5G42610:AT5G42610:calcium uniporter (DUF607) 1Chr14:6486139–6488935 (+)8.166e-11
Glyma.14G077200 hypothetical protein AT5G42620:AT5G42620:metalloendopeptidase / zinc ion binding protein 1Chr14:6498564–6506068 (+)8.167e-11
Glyma.14G077300 hypothetical protein AT1G75040:PR5:pathosis-related protein 5 1Chr14:6508609–6520744 (-)8.166e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)3.688e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.893e-11
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)2.737e-11
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)8.204e-11
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)8.204e-11
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)4.714e-11
Glyma.16G020500 hypothetical protein AT4G00870:AT4G00870:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr16:1877938–1879947 (-)9.738e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)4.738e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)4.8e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)4.155e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)4.004e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)4.004e-11
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)2.155e-11
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)1.282e-11
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)1.864e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)2.491e-13
Glyma.16G209000 hypothetical protein NA 1Chr16:36841786–36845498 (-)2.147e-12
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)7.216e-11
Glyma.18G044600 hypothetical protein AT4G10710:SPT16:global transcription factor C 1Chr18:3846050–3851668 (+)3.884e-11
Glyma.18G044700 hypothetical protein NA 1Chr18:3846777–3847566 (+)3.884e-11
Glyma.18G044800 hypothetical protein NA 1Chr18:3854125–3856926 (+)3.884e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)1.006e-12
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)4.083e-12
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)1.709e-13
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)3.45e-12
Glyma.18G298800 hypothetical protein NA 1Chr18:57633577–57639546 (+)1.671e-11
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)2.175e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)4.384e-12
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1134716–1143232 (+)2.657e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.157e-14
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.157e-14
Glyma.19G127700 hypothetical protein AT5G12250:TUB6:beta-6 tubulin 1Chr19:38632803–38635633 (+)2.056e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)1.931e-15
Glyma.19G194300 Dt1 AT5G03840:TFL1:PEBP (phosphatidylethanolamine-binding protein) family protein 1Chr19:45183357–45185175 (-)1.725e-11
Glyma.19G194500 hypothetical protein AT2G36270:ABI5:Basic-leucine zipper (bZIP) transcription factor family protein 1Chr19:45201612–45206816 (+)1.725e-11
Glyma.19G194800 hypothetical protein AT2G36250:FTSZ2-1:Tubulin/FtsZ family protein 1Chr19:45215929–45223182 (+)1.725e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)1.378e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.396e-11
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)9.54e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.425e-11
Glyma.20G149900 hypothetical protein NA 1Chr20:38879682–38881629 (-)1.525e-11
Glyma.20G150300 hypothetical protein AT3G22830:HSFA6B:heat shock transcription factor A6B 1Chr20:38922066–38924621 (+)4.243e-11
Glyma.20G150500 hypothetical protein AT1G04200:AT1G04200:dyggve-melchior-clausen syndrome protein 1Chr20:38931470–38938465 (+)4.243e-11
Glyma.20G152300 hypothetical protein NA 1Chr20:39117272–39119456 (+)1.21e-11