Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P13251

Metabolite ID
P13251
Deionized mass
286.1322 Da
Average m/z
287.1400
Average RT
11.4026
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
91
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

91 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)1.255e-13
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)1.773e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)8.451e-12
Glyma.09G053800 hypothetical protein NA 2Chr09:4737413–4755632 (-)8.636e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.75e-14
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)3.111e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.254e-13
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)6.912e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)9.983e-13
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)2.827e-14
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)7.976e-14
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)7.976e-14
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)8.208e-15
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.426e-14
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.426e-14
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.426e-14
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.188e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.516e-12
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)8.971e-11
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)2.503e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)2.503e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)2.503e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)2.061e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)5.406e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)5.406e-12
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)8.142e-11
Glyma.06G129800 hypothetical protein AT5G53030:AT5G53030:uncharacterized protein 1Chr06:10667029–10669377 (+)8.264e-11
Glyma.06G130100 hypothetical protein AT3G49290:ABIL2:ABL interactor-like protein 2 1Chr06:10695256–10699675 (+)8.264e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)1.256e-13
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)1.255e-13
Glyma.07G078000 hypothetical protein NA 1Chr07:7121636–7126695 (+)3.575e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)4.266e-14
Glyma.08G114800 hypothetical protein AT5G19830:AT5G19830:Peptidyl-tRNA hydrolase family protein 1Chr08:8792663–8798214 (-)7.689e-11
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)7.498e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)8.451e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)8.451e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)8.451e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)8.451e-12
Glyma.08G211100 GLYI-9 putative lactoylglutathione lyase AT1G80160:GLYI7:Lactoylglutathione lyase / glyoxalase I family protein 1Chr08:17046316–17048640 (-)4.476e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)3.16e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)2.804e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)7.122e-12
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)3.063e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)7.746e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.607e-15
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.188e-14
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)1.56e-11
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)3.743e-12
Glyma.12G028800 hypothetical protein AT1G50300:TAF15:TBP-associated factor 15 1Chr12:2148313–2153234 (-)7.845e-11
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 1Chr12:34708678–34710549 (+)1.381e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.189e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.189e-13
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)3.43e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)6.183e-13
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)5.888e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.871e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.871e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.338e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.338e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)2.338e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)2.338e-11
Glyma.13G200600 hypothetical protein AT1G64830:AT1G64830:Eukaryotic aspartyl protease family protein 1Chr13:31428112–31429431 (-)6.566e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)6.377e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)7.865e-13
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)6.103e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)1.227e-12
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)2.15e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)4.471e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)5.793e-14
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)4.471e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)4.471e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.892e-11
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)1.79e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)8.214e-11
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)8.214e-11
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)2.07e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)2.652e-12
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)7.143e-12
Glyma.16G180100 hypothetical protein NA 1Chr16:34070806–34076053 (+)6.432e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)3.034e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)5.866e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)1.098e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.098e-11
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)1.773e-11
Glyma.18G045700 hypothetical protein NA 1Chr18:3956176–3958846 (+)3.428e-11
Glyma.18G106600 hypothetical protein NA 1Chr18:11947553–11951868 (+)3.114e-11
Glyma.18G106700 hypothetical protein NA 1Chr18:11956201–11957138 (-)1.692e-11
Glyma.18G106800 hypothetical protein AT2G42880:MPK20:MAP kinase 20 1Chr18:11959920–11966545 (-)1.692e-11
Glyma.18G242900 hypothetical protein NA 1Chr18:53113341–53119592 (-)7.966e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)2.182e-13
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)2.905e-11