Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P13122

Metabolite ID
P13122
Deionized mass
688.8638 Da
Average m/z
689.8725
Average RT
11.3648
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
98
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

98 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.01G045600 hypothetical protein NA 3Chr01:5242432–5245038 (-)2.355e-11
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)1.083e-11
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 2Chr04:7187985–7192897 (+)1.875e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)5.195e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)2.703e-15
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.134e-13
Glyma.18G100200 hypothetical protein NA 2Chr18:10512806–10522231 (+)1.235e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 2Chr19:1155711–1161298 (-)3.334e-16
Glyma.19G012300 hypothetical protein NA 2Chr19:1165111–1173031 (-)3.334e-16
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)2.355e-11
Glyma.01G234100 hypothetical protein AT5G13270:RARE1:Pentatricopeptide repeat (PPR) superfamily protein 1Chr01:56022128–56026001 (+)8.886e-12
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)5.531e-11
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 1Chr03:1875182–1876855 (+)3.106e-12
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 1Chr03:2007617–2009871 (+)2.267e-11
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)3.756e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)7.755e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)6.241e-14
Glyma.03G022300 hypothetical protein AT3G60880:DHDPS1:dihydrodipicolinate synthase 1 1Chr03:2331191–2334210 (-)6.004e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.848e-17
Glyma.04G018000 hypothetical protein AT5G42310:AT5G42310:Pentatricopeptide repeat (PPR-like) superfamily protein 1Chr04:1402993–1407323 (-)6.957e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)9.88e-12
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)2.529e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)8.266e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)1.953e-14
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)1.914e-11
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)2.238e-15
Glyma.04G190700 hypothetical protein NA 1Chr04:46143583–46146881 (+)7.249e-11
Glyma.04G190800 hypothetical protein AT5G07460:PMSR2:peptidemethionine sulfoxide reductase 2 1Chr04:46143080–46147709 (-)7.249e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)6.822e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.572e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.572e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.572e-11
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)4.788e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)2.708e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.729e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.799e-14
Glyma.06G131700 hypothetical protein NA 1Chr06:10850105–10855203 (+)2.518e-15
Glyma.06G132100 hypothetical protein NA 1Chr06:10873977–10879178 (-)2.518e-15
Glyma.06G275800 hypothetical protein AT2G30980:SKdZeta:SHAGGY-related protein kinase dZeta 1Chr06:46677753–46682900 (-)4.426e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)1.422e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)2.603e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)1.422e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)1.422e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)2.603e-11
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)3.309e-11
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)3.309e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)5.144e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)4.416e-15
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.219e-13
Glyma.09G177400 hypothetical protein NA 1Chr09:40183616–40184826 (-)8.752e-11
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)3.264e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)6.272e-13
Glyma.09G269100 hypothetical protein NA 1Chr09:48651429–48653656 (-)5.508e-11
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)2.069e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)7.86e-13
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)1.512e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.613e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.613e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)9.258e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)9.258e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)8.132e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)8.132e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)8.132e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)1.468e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)4.841e-11
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)8.987e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.134e-13
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.829e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)3.627e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.829e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.829e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.571e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.78e-15
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.083e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.237e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)9.143e-12
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)5.203e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)1.307e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)4.254e-13
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)2.683e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)1.216e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)1.216e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)9.938e-15
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)7.87e-12
Glyma.17G099300 hypothetical protein AT3G47610:AT3G47610:transcription regulator/ zinc ion binding protein 1Chr17:7838198–7840795 (-)4.835e-11
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)1.235e-11
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)1.067e-11
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)1.235e-11
Glyma.18G100300 hypothetical protein NA 1Chr18:10523838–10534676 (+)4.804e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)5.069e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)6.564e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)4.71e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)4.844e-12
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)4.844e-12
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1134716–1143232 (+)2.673e-11
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 1Chr19:1148510–1149495 (+)2.194e-12
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)6.018e-13
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.46e-11