Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P12935

Metabolite ID
P12935
Deionized mass
611.1600 Da
Average m/z
612.1668
Average RT
11.3061
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
72
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

72 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.01G045600 hypothetical protein NA 3Chr01:5242432–5245038 (-)1.354e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 3Chr20:34984922–34988496 (+)2.915e-12
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 2Chr03:5113019–5121557 (+)8.729e-13
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)7.801e-14
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)2.212e-12
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)4.716e-11
Glyma.02G293100 hypothetical protein AT3G20800:AT3G20800:Cell differentiation, Rcd1-like protein 1Chr02:47183443–47188007 (-)7.744e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.468e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.31e-11
Glyma.03G081100 hypothetical protein NA 1Chr03:21841282–21846130 (+)8.627e-11
Glyma.03G085900 hypothetical protein AT3G07310:AT3G07310:phosphoserine aminotransferase, putative (DUF760) 1Chr03:25280967–25285887 (-)9.919e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)1.345e-11
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 1Chr03:44064511–44073939 (+)4.257e-11
Glyma.04G006300 hypothetical protein NA 1Chr04:505636–506386 (+)7.574e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.7e-11
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)3.154e-11
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)5.1e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)6.536e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.862e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)6.862e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)6.862e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)6.862e-11
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr06:10709045–10716245 (-)3.731e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)2.399e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.58e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)7.801e-14
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)7.801e-14
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)7.801e-14
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)7.801e-14
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)5.025e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)5.025e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)9.807e-13
Glyma.08G296900 hypothetical protein NA 1Chr08:41297891–41301852 (+)1.018e-11
Glyma.09G252100 hypothetical protein AT1G79790:FHY1:Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 1Chr09:47245185–47248478 (+)2.293e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)9.68e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)9.68e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)9.68e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)9.68e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)7.063e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)6.438e-13
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)2.395e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)1.07e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)3.556e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)3.556e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)3.556e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)3.556e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)1.549e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)6.673e-11
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)1.218e-12
Glyma.15G111000 hypothetical protein AT1G62305:AT1G62305:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein__AT1G11940:AT1G11940:Cor… 1Chr15:8692505–8697919 (-)4.109e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)4.657e-14
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)4.82e-11
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)1.456e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)5.144e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)3.525e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)3.525e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)7.902e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)7.902e-11
Glyma.17G214600 hypothetical protein NA 1Chr17:36049053–36054871 (-)7.427e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)5.949e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)6.76e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)1.466e-11
Glyma.18G267500 hypothetical protein NA 1Chr18:55179516–55181798 (-)4.07e-11
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)6.237e-13
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)8.053e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)8.053e-11
Glyma.19G119100 hypothetical protein AT3G03650:EDA5:Exostosin family protein 1Chr19:37668759–37672434 (+)9.466e-11
Glyma.19G150000 hypothetical protein AT3G58060:AT3G58060:Cation efflux family protein 1Chr19:41018746–41025024 (+)4.108e-12
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)6.902e-12
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)3.356e-12
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)1.419e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)1.556e-11