Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P12516

Metabolite ID
P12516
Deionized mass
170.0196 Da
Average m/z
171.0281
Average RT
11.1404
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
126
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

126 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 5Chr16:36856833–36863994 (-)1.244e-13
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)1.656e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 4Chr16:26324650–26336836 (+)1.491e-12
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)3.263e-11
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)2.7e-11
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)3.192e-11
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 2Chr03:1683395–1688893 (-)9.387e-12
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 2Chr03:1875182–1876855 (+)1.14e-15
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 2Chr03:2007617–2009871 (+)1.522e-12
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)7.601e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)6.214e-13
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)1.952e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.062e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.062e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)3.551e-14
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)4.454e-14
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)5.809e-11
Glyma.16G055700 hypothetical protein AT3G56320:AT3G56320:PAP/OAS1 substrate-binding domain superfamily 2Chr16:5450641–5458545 (-)3.077e-13
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)2.056e-14
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)3.263e-11
Glyma.20G013100 hypothetical protein NA 2Chr20:1134080–1135710 (-)2.654e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)2.614e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)3.623e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)2.197e-13
Glyma.02G303600 hypothetical protein NA 1Chr02:47883626–47887124 (-)4.331e-11
Glyma.02G303700 hypothetical protein NA 1Chr02:47892900–47896207 (+)4.331e-11
Glyma.02G304000 hypothetical protein AT1G51350:AT1G51350:ARM repeat superfamily protein 1Chr02:47908136–47915999 (-)4.331e-11
Glyma.03G017800 hypothetical protein AT4G00770:TRM9:DUF4378 domain protein 1Chr03:1780719–1783735 (+)7.358e-13
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)8.355e-16
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.886e-12
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)2.319e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)4.183e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)8.965e-12
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)1.997e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.677e-12
Glyma.05G125800 hypothetical protein AT2G34790:MEE23:FAD-binding Berberine family protein 1Chr05:31926976–31929133 (+)4.277e-11
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)3.178e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.251e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.447e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.447e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.373e-14
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.187e-14
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.187e-14
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.187e-14
Glyma.05G182500 hypothetical protein AT5G65210:TGA1:bZIP transcription factor family protein 1Chr05:37029299–37037313 (+)3.223e-11
Glyma.05G182900 hypothetical protein NA 1Chr05:37056753–37057349 (-)3.224e-11
Glyma.05G183100 hypothetical protein AT5G64940:ATH13:ABC2 homolog 13 1Chr05:37059525–37070146 (-)3.224e-11
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)3.294e-13
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)2.064e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)3.884e-11
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)7.595e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)7.481e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)6.86e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.077e-13
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)8.31e-13
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)8.31e-13
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)8.31e-13
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.805e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.805e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)6.523e-11
Glyma.06G275800 hypothetical protein AT2G30980:SKdZeta:SHAGGY-related protein kinase dZeta 1Chr06:46677753–46682900 (-)1.771e-11
Glyma.06G285200 hypothetical protein AT2G31060:EMB2785:elongation factor family protein 1Chr06:47380397–47390651 (+)4.01e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)5.812e-16
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)3.766e-15
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)5.812e-16
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)5.812e-16
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)3.766e-15
Glyma.06G292400 hypothetical protein AT4G28320:MAN5:Glycosyl hydrolase superfamily protein 1Chr06:48130296–48134955 (+)4.819e-13
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 1Chr06:48170133–48173010 (-)4.382e-12
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)1.016e-11
Glyma.07G018100 hypothetical protein NA 1Chr07:1442368–1445430 (-)6.985e-12
Glyma.07G018300 hypothetical protein AT3G27750:EMB3123:PPR containing protein 1Chr07:1457706–1458428 (+)6.985e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)8.163e-11
Glyma.08G039600 hypothetical protein NA 1Chr08:3107698–3116601 (-)5.738e-11
Glyma.09G018700 hypothetical protein NA 1Chr09:1470411–1472672 (-)7.13e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)9.111e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.845e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.845e-13
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.845e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.845e-13
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.281e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.166e-14
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)3.609e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)3.609e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)2.081e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)2.081e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)7.561e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)7.561e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.952e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)5.462e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)5.461e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.062e-12
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)7.338e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)1.901e-15
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)5.576e-17
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)3.551e-14
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)4.454e-14
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)5.186e-13
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)5.186e-13
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)3.015e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)3.766e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)3.015e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)3.015e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)4.03e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.846e-15
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)8.079e-11
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)8.079e-11
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)1.326e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)1.656e-11
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)6e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)1.18e-11
Glyma.16G117000 hypothetical protein NA 1Chr16:26140411–26140830 (+)7.271e-11
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)3.321e-13
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)2.7e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)2.7e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)2.327e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.125e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)3.379e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)4.502e-13
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)7.679e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)7.679e-12
Glyma.17G135100 hypothetical protein AT1G62840:AT1G62840:ankyrin repeat/KH domain protein (DUF1442) 1Chr17:10870710–10872285 (+)2.888e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)8.744e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)5.656e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)5.657e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)5.589e-13