Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P12282

Metabolite ID
P12282
Deionized mass
206.1758 Da
Average m/z
207.1837
Average RT
11.0481
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
62
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

62 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)6.611e-11
Glyma.12G197600 hypothetical protein AT4G03210:XTH9:xyloglucan endotransglucosylase/hydrolase 9 3Chr12:35879106–35881779 (+)3.73e-13
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)5.975e-13
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)4.742e-11
Glyma.12G196800 hypothetical protein AT4G15180:SDG2:SET domain protein 2 2Chr12:35784957–35801339 (+)5.933e-13
Glyma.12G197400 TPS14 terpene synthase 14 NA 2Chr12:35854108–35858237 (+)2.078e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)3.925e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)3.925e-14
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.275e-12
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)2.97e-11
Glyma.01G040000 hypothetical protein NA 1Chr01:4336374–4338196 (+)9.495e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)2.572e-12
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)7.375e-12
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 1Chr03:2007617–2009871 (+)3.86e-11
Glyma.03G019700 hypothetical protein AT3G61130:GAUT1:galacturonosyltransferase 1 1Chr03:2010835–2018418 (+)2.021e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.091e-12
Glyma.03G169700 hypothetical protein AT2G20240:TRM17:GPI-anchored adhesin-like protein, putative (DUF3741)__AT4G28760:TRM20:methyl-coenzyme M reductase II s… 1Chr03:38442950–38448706 (+)5.203e-11
Glyma.03G171500 hypothetical protein AT3G53720:CHX20:cation/H+ exchanger 20 1Chr03:38601039–38606103 (+)1.305e-11
Glyma.03G173600 hypothetical protein AT3G53570:FC1:serine/threonine-protein kinase AFC1 1Chr03:38756369–38760896 (+)3.161e-11
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)6.03e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.875e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)5.939e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)5.939e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.483e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)6.603e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)6.603e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)6.603e-12
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)3.639e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.749e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.958e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)6.611e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)6.611e-11
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)1.513e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)3.473e-11
Glyma.09G068800 hypothetical protein AT5G35560:AT5G35560:DENN (AEX-3) domain-containing protein 1Chr09:6979166–6993110 (-)6.515e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.624e-11
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)6.148e-11
Glyma.09G202900 hypothetical protein AT5G10560:AT5G10560:Glycosyl hydrolase family protein 1Chr09:42685911–42690981 (-)6.342e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)5.586e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)1.079e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)8.119e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)8.119e-12
Glyma.12G197500 hypothetical protein NA 1Chr12:35869162–35874097 (+)5.933e-13
Glyma.12G197800 hypothetical protein NA 1Chr12:35892655–35896825 (-)5.933e-13
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)7.658e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)7.658e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)5.966e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)5.975e-13
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)1.247e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)5.276e-13
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)5.276e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.925e-14
Glyma.14G044000 hypothetical protein AT5G62290:AT5G62290:nucleotide-sensitive chloride conductance regulator (ICln) family protein 1Chr14:3343611–3346483 (+)8.087e-12
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)1.416e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)6.506e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.17e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)5.059e-13
Glyma.16G050000 hypothetical protein AT5G14040:PHT3;1:phosphate transporter 3;1 1Chr16:4788380–4801207 (+)3.666e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)2.097e-11
Glyma.17G189300 hypothetical protein NA 1Chr17:25644440–25649489 (-)2.625e-11
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)4.742e-11
Glyma.19G022500 hypothetical protein AT5G15230:GASA4:GAST1 protein homolog 4 1Chr19:2574642–2577346 (+)5.933e-13