Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P12153

Metabolite ID
P12153
Deionized mass
341.1720 Da
Average m/z
342.1779
Average RT
11.0128
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
61
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

61 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 4Chr13:31727841–31735910 (-)1.131e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 4Chr16:26324650–26336836 (+)7.094e-15
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)5.783e-11
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)8.208e-15
Glyma.06G183500 hypothetical protein AT5G50000:AT5G50000:Protein kinase superfamily protein 2Chr06:15828917–15834067 (+)4.513e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)1.097e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)4.938e-14
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)2.402e-11
Glyma.13G201600 hypothetical protein NA 2Chr13:31521512–31522992 (+)2.879e-12
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 2Chr13:31720004–31725252 (+)1.131e-13
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)5.783e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)6.659e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)3.688e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)4.803e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.913e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.853e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.853e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.853e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.626e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.632e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.27e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.27e-12
Glyma.06G317900 hypothetical protein AT5G51400:AT5G51400:PLAC8 family protein 1Chr06:50645095–50649256 (+)2.737e-11
Glyma.07G013900 hypothetical protein NA 1Chr07:1088867–1093047 (+)3.241e-12
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)2.443e-12
Glyma.09G060600 hypothetical protein AT3G28430:AT3G28430:CLEC16A-like protein 1Chr09:5661672–5675338 (-)4.135e-14
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.981e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.64e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.64e-13
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.64e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.64e-13
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.089e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)4.137e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.352e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.352e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)6.685e-11
Glyma.12G203300 hypothetical protein AT4G03430:EMB2770:pre-mRNA splicing factor-like protein 1Chr12:36371465–36377700 (-)1.196e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.233e-13
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)4.938e-14
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)6.687e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)2.402e-11
Glyma.13G185400 hypothetical protein NA 1Chr13:29936606–29937420 (+)5.618e-11
Glyma.13G202000 hypothetical protein NA 1Chr13:31566728–31571708 (-)6.417e-11
Glyma.13G203600 hypothetical protein AT5G13490:AAC2:ADP/ATP carrier 2 1Chr13:31753843–31756013 (-)9.411e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)1.131e-13
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)6.346e-15
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)3.211e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)3.792e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)3.857e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)3.792e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)3.792e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.275e-12
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)8.208e-15
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)8.208e-15
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)1.296e-14
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)7.352e-13
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)1.166e-13
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)7.821e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)1.582e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)5.017e-14
Glyma.20G217700 hypothetical protein AT1G32810:AT1G32810:RING/FYVE/PHD zinc finger superfamily protein 1Chr20:45347424–45357977 (-)6.409e-11