Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P12025

Metabolite ID
P12025
Deionized mass
403.1824 Da
Average m/z
404.1924
Average RT
10.9572
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
54
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

54 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)2.84e-13
Glyma.01G045600 hypothetical protein NA 2Chr01:5242432–5245038 (-)9.215e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)9.718e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.69e-20
Glyma.15G140400 hypothetical protein NA 2Chr15:11495189–11495691 (+)1.665e-11
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)6.755e-11
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)9.215e-11
Glyma.02G303600 hypothetical protein NA 1Chr02:47883626–47887124 (-)7.604e-11
Glyma.02G303700 hypothetical protein NA 1Chr02:47892900–47896207 (+)7.604e-11
Glyma.02G304000 hypothetical protein AT1G51350:AT1G51350:ARM repeat superfamily protein 1Chr02:47908136–47915999 (-)7.604e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)9.059e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)5.325e-13
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.045e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.009e-11
Glyma.06G129800 hypothetical protein AT5G53030:AT5G53030:uncharacterized protein 1Chr06:10667029–10669377 (+)2.807e-11
Glyma.06G130100 hypothetical protein AT3G49290:ABIL2:ABL interactor-like protein 2 1Chr06:10695256–10699675 (+)2.807e-11
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr06:10709045–10716245 (-)9.846e-12
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)7.129e-12
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)2.84e-13
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)2.84e-13
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.916e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)9.718e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)9.718e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)9.718e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)9.718e-11
Glyma.08G182000 hypothetical protein NA 1Chr08:14601875–14604750 (+)5.289e-11
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)1.602e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)2.942e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.365e-15
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.789e-14
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)2.959e-12
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)2.959e-12
Glyma.11G118200 hypothetical protein NA 1Chr11:8979431–8983783 (+)2.75e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)4.214e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)4.214e-11
Glyma.13G170600 ALDH2B6 aldehyde dehydrogenase family 2 member B6 AT1G23800:ALDH2B7:aldehyde dehydrogenase 2B7 1Chr13:28436396–28440865 (-)4.367e-11
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)3.195e-12
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)7.845e-12
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)4.176e-11
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)1.621e-12
Glyma.15G049800 hypothetical protein NA 1Chr15:3927843–3933656 (-)8.602e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.852e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.42e-11
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)4.984e-11
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)7.673e-12
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)3.299e-11
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)7.494e-12
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)9.153e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)2.044e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)2.988e-12
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)2.044e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)2.044e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)8.785e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)8.785e-13