Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P12012

Metabolite ID
P12012
Deionized mass
106.0419 Da
Average m/z
107.0486
Average RT
10.9539
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
78
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

78 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 2Chr03:2423540–2428634 (-)1.214e-14
Glyma.10G081700 hypothetical protein NA 2Chr10:9752508–9758422 (+)1.951e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 2Chr12:36267599–36271584 (+)5.455e-17
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)3.285e-11
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)6.546e-13
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)3.306e-11
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)3.877e-12
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)5.291e-11
Glyma.01G099100 hypothetical protein NA 1Chr01:33017228–33023840 (+)1.164e-11
Glyma.01G099600 hypothetical protein AT3G53930:AT3G53930:Protein kinase superfamily protein__AT2G37840:AT2G37840:Protein kinase superfamily protein 1Chr01:33115843–33125726 (-)1.164e-11
Glyma.01G099900 hypothetical protein NA 1Chr01:33275414–33282430 (+)1.164e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)5.947e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)6.807e-14
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)6.807e-14
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)6.199e-15
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)7.28e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)1.079e-11
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)7.323e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)1.045e-12
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)1.84e-12
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)5.603e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)9.274e-13
Glyma.03G022900 hypothetical protein NA 1Chr03:2409690–2420328 (-)7.955e-12
Glyma.03G031700 hypothetical protein AT1G79600:AT1G79600:Protein kinase superfamily protein 1Chr03:3567906–3572939 (-)2.855e-13
Glyma.03G034200 hypothetical protein NA 1Chr03:3989072–3993561 (+)9.314e-12
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)4.561e-11
Glyma.03G136000 hypothetical protein NA 1Chr03:35138670–35188160 (-)9.024e-13
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)2.274e-12
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)7.972e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)5.71e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)5.71e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)5.71e-12
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)5.172e-14
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)1.712e-12
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)5.596e-12
Glyma.09G075500 hypothetical protein NA 1Chr09:8234794–8241097 (+)1.986e-12
Glyma.09G075600 hypothetical protein AT1G34630:AT1G34630:uncharacterized protein 1Chr09:8255346–8260648 (-)1.986e-12
Glyma.09G078300 hypothetical protein AT4G29400:AT4G29400:oxidoreductase/transition metal ion-binding protein (DUF3531) 1Chr09:8708840–8718819 (-)1.986e-12
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)2.345e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.505e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.855e-11
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 1Chr09:46835469–46838091 (-)8.134e-14
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)4.163e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)4.163e-11
Glyma.10G079700 hypothetical protein AT2G35980:YLS9:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr10:9218478–9219468 (-)5.36e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)4.163e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)4.163e-11
Glyma.10G080600 hypothetical protein NA 1Chr10:9501678–9504456 (+)4.837e-12
Glyma.10G080700 hypothetical protein NA 1Chr10:9510013–9512097 (+)4.837e-12
Glyma.10G080900 hypothetical protein NA 1Chr10:9552268–9552854 (+)4.837e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.79e-11
Glyma.10G082100 hypothetical protein AT3G05680:EMB2016:embryo defective 2016 1Chr10:9934486–9960586 (-)1.107e-12
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)4.094e-12
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)4.093e-12
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)4.093e-12
Glyma.12G198700 hypothetical protein AT5G62990:emb1692:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr12:36001658–36004086 (+)1.785e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)5.455e-17
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)3.478e-12
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)2.793e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)3.285e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)6.546e-13
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)6.149e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)4.583e-16
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.265e-14
Glyma.16G019400 SHAT1-5 NAC domain-containing protein 43-like NA 1Chr16:1725643–1728272 (+)6.564e-11
Glyma.16G024800 hypothetical protein AT4G31010:AT4G31010:RNA-binding CRS1 / YhbY (CRM) domain-containing protein 1Chr16:2407161–2410997 (-)7.424e-11
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)2.482e-15
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)3.877e-12
Glyma.16G189500 hypothetical protein NA 1Chr16:35202920–35206459 (-)3.385e-11
Glyma.17G008200 hypothetical protein NA 1Chr17:685577–688365 (+)6.256e-11
Glyma.17G137100 hypothetical protein AT4G22860:AT4G22860:Cell cycle regulated microtubule associated protein 1Chr17:11065492–11072635 (+)8.611e-12
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)6.48e-12
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)2.114e-12
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)8.1e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)8.1e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.115e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.115e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)3.259e-12