Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P11959

Metabolite ID
P11959
Deionized mass
476.0996 Da
Average m/z
477.1018
Average RT
10.9357
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
74
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

74 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)7.685e-11
Glyma.13G224800 hypothetical protein NA 3Chr13:33748627–33756494 (-)2.45e-11
Glyma.05G164700 hypothetical protein NA 2Chr05:35543931–35549196 (-)1.143e-14
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)2.398e-11
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)4.76e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)7.685e-11
Glyma.20G112600 hypothetical protein AT5G04310:AT5G04310:Pectin lyase-like superfamily protein 2Chr20:35468911–35474203 (+)3.239e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)7.755e-14
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)5.271e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)8.875e-12
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)6.669e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)2.204e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)2.204e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)2.204e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.44e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.44e-11
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)4.145e-14
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)1.601e-11
Glyma.08G336900 hypothetical protein AT1G55730:CAX5:cation exchanger 5 1Chr08:45376142–45387404 (-)1.44e-11
Glyma.09G053800 hypothetical protein NA 1Chr09:4737413–4755632 (-)9.412e-11
Glyma.11G110300 hypothetical protein AT2G16530:AT2G16530:3-oxo-5-alpha-steroid 4-dehydrogenase family protein__AT1G72590:AT1G72590:3-oxo-5-alpha-steroid 4-d… 1Chr11:8402144–8406496 (-)3.636e-12
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)4.452e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)4.452e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)4.452e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.049e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.049e-11
Glyma.12G198700 hypothetical protein AT5G62990:emb1692:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr12:36001658–36004086 (+)2.463e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)6.69e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)4.957e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)4.957e-11
Glyma.13G189700 hypothetical protein AT5G07050:UMAMIT9:nodulin MtN21 /EamA-like transporter family protein 1Chr13:30310606–30315849 (-)1.199e-11
Glyma.13G224300 hypothetical protein NA 1Chr13:33703380–33715996 (-)2.45e-11
Glyma.13G224500 hypothetical protein AT1G29750:RKF1:receptor-like kinase in flowers 1 1Chr13:33725180–33735368 (+)2.579e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)2.937e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)5.763e-12
Glyma.16G041800 hypothetical protein NA 1Chr16:3914214–3917387 (-)2.884e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)4.76e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)7.922e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)9.922e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)2.594e-14
Glyma.16G142300 hypothetical protein AT4G36850:AT4G36850:PQ-loop repeat family protein / transmembrane family protein 1Chr16:30086178–30091466 (-)7.633e-12
Glyma.16G143400 hypothetical protein NA 1Chr16:30337469–30338390 (-)1.342e-14
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)3.183e-11
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)1.156e-11
Glyma.16G208400 hypothetical protein NA 1Chr16:36789890–36801967 (-)1.581e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)1.185e-12
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)7.833e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)4.332e-14
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr19:472201–476152 (-)1.226e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.82e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.82e-13
Glyma.20G053000 hypothetical protein NA 1Chr20:11983566–11990328 (-)8.425e-11
Glyma.20G053700 hypothetical protein NA 1Chr20:12341598–12348808 (+)8.425e-11
Glyma.20G055400 hypothetical protein NA 1Chr20:13199672–13205467 (+)8.425e-11
Glyma.20G056500 hypothetical protein AT1G35220:AT1G35220:FAM91 carboxy-terminus protein 1Chr20:14773334–14777681 (-)8.425e-11
Glyma.20G056800 hypothetical protein AT2G32970:AT2G32970:G1/S-specific cyclin-E protein 1Chr20:15720600–15729831 (-)8.425e-11
Glyma.20G057300 hypothetical protein NA 1Chr20:16424783–16426060 (-)8.425e-11
Glyma.20G057500 hypothetical protein NA 1Chr20:16724289–16728840 (+)8.425e-11
Glyma.20G058000 hypothetical protein AT1G76490:HMG1:hydroxy methylglutaryl CoA reductase 1 1Chr20:17037758–17043212 (-)8.425e-11
Glyma.20G058300 hypothetical protein AT2G31340:emb1381:embryo defective 1381 1Chr20:17536634–17556845 (-)9.396e-13
Glyma.20G058500 hypothetical protein AT5G35690:AT5G35690:zinc metalloproteinase-like protein 1Chr20:17704024–17732890 (-)9.396e-13
Glyma.20G058600 hypothetical protein NA 1Chr20:17714996–17723526 (-)9.396e-13
Glyma.20G058900 hypothetical protein NA 1Chr20:17856607–17870302 (-)9.396e-13
Glyma.20G059000 hypothetical protein AT4G12650:AT4G12650:Endomembrane protein 70 protein family 1Chr20:17864634–17867799 (+)9.396e-13
Glyma.20G059300 hypothetical protein NA 1Chr20:17987356–17987736 (-)8.425e-11
Glyma.20G060000 hypothetical protein AT2G04360:AT2G04360:uncharacterized protein 1Chr20:18396137–18402016 (+)9.396e-13
Glyma.20G061600 hypothetical protein AT4G12680:AT4G12680:uncharacterized protein 1Chr20:19167408–19171993 (-)9.396e-13
Glyma.20G061900 hypothetical protein NA 1Chr20:19276438–19277943 (-)9.396e-13
Glyma.20G062200 hypothetical protein NA 1Chr20:19517781–19521218 (-)9.396e-13
Glyma.20G064100 hypothetical protein NA 1Chr20:21538873–21551968 (+)9.396e-13
Glyma.20G065200 hypothetical protein AT4G14965:MAPR4:membrane-associated progesterone binding protein 4 1Chr20:23032161–23039465 (+)9.396e-13
Glyma.20G065700 hypothetical protein NA 1Chr20:23270247–23273003 (+)9.396e-13
Glyma.20G066100 NRP-A AT5G42050:AT5G42050:DCD (Development and Cell Death) domain protein 1Chr20:23415656–23418864 (-)9.396e-13
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)1.649e-11