Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P11944

Metabolite ID
P11944
Deionized mass
357.1057 Da
Average m/z
358.1110
Average RT
10.9283
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
132
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

132 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)7.002e-11
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 2Chr08:9198213–9201688 (-)5.048e-14
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)1.937e-15
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 2Chr08:9435391–9437279 (+)1.937e-15
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.937e-15
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)8.483e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)8.483e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)8.483e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)1.727e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.091e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.091e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)6.631e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)6.121e-13
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)4.868e-12
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)6.013e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.121e-15
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.121e-15
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)8.654e-12
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)4.497e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)2.554e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.675e-14
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.81e-11
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 1Chr04:7187985–7192897 (+)8.345e-11
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)5.084e-11
Glyma.05G124100 hypothetical protein AT5G44450:AT5G44450:alpha amino-terminal protein methyltransferase 1Chr05:31769844–31775954 (-)2.001e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.838e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)4.538e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)3.714e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)3.714e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)3.389e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.711e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.711e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.711e-12
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)8.862e-11
Glyma.05G131100 hypothetical protein AT5G60620:GPAT9:glycerol-3-phosphate acyltransferase 9 1Chr05:32411641–32419257 (+)2.798e-13
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)2.798e-13
Glyma.05G131500 hypothetical protein AT5G44800:CHR4:chromatin remodeling 4 1Chr05:32446303–32473428 (+)2.919e-13
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.219e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.466e-11
Glyma.05G233500 hypothetical protein NA 1Chr05:41066769–41067350 (-)6.938e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.538e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)8.015e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.62e-12
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)4.611e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)2.09e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)9.378e-11
Glyma.07G062300 hypothetical protein AT2G46220:AT2G46220:DUF2358 family protein (DUF2358) 1Chr07:5518907–5522005 (+)7.299e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)5.16e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)2.658e-13
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.937e-15
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)8.868e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.937e-15
Glyma.08G183700 Fasciclin-like arabinogalactan protein 19 NA 1Chr08:14738283–14742033 (+)6.512e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)5.653e-13
Glyma.08G211100 GLYI-9 putative lactoylglutathione lyase AT1G80160:GLYI7:Lactoylglutathione lyase / glyoxalase I family protein 1Chr08:17046316–17048640 (-)9.476e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)6.015e-14
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)4.772e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)4.657e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)7.009e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)4.019e-12
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)7.903e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)8.483e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)8.483e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)8.483e-11
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)7.99e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)8.483e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)8.483e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)9.655e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)4.234e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)4.234e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)4.234e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)4.234e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)3.748e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)3.938e-12
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)9.934e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)9.096e-11
Glyma.11G118200 hypothetical protein NA 1Chr11:8979431–8983783 (+)1.214e-11
Glyma.11G119600 hypothetical protein AT2G16130:PMT2:polyol/monosaccharide transporter 2 1Chr11:9127497–9129972 (-)3.576e-11
Glyma.12G054500 hypothetical protein NA 1Chr12:3938604–3943724 (+)2.762e-11
Glyma.12G054700 hypothetical protein AT3G45140:LOX2:lipoxygenase 2 1Chr12:3949453–3957386 (-)2.143e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.503e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.503e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)3.368e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)3.368e-12
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)7.358e-13
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.79e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.79e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)2.848e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.397e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)9.023e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)9.023e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.408e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.408e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.091e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)6.837e-11
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)9.394e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)2.413e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)1.724e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.724e-11
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)3.335e-12
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)3.175e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)3.242e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)4.144e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)3.242e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)3.242e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.64e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)6.649e-13
Glyma.15G140400 hypothetical protein NA 1Chr15:11495189–11495691 (+)9.057e-11
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)5.084e-13
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)7.093e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)3.839e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)7.002e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)7.003e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)7.003e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)7.003e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)5.362e-13
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)8.616e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)4.187e-13
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)4.868e-12
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)4.202e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)4.202e-12
Glyma.18G045700 hypothetical protein NA 1Chr18:3956176–3958846 (+)6.167e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)9.587e-12
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)1.011e-11
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)6.184e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.847e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.847e-12
Glyma.19G119100 hypothetical protein AT3G03650:EDA5:Exostosin family protein 1Chr19:37668759–37672434 (+)1.054e-11
Glyma.19G119200 hypothetical protein AT3G03630:CS26:cysteine synthase 26 1Chr19:37677773–37683394 (+)6.238e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)6.246e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)8.106e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.484e-11