Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P11915

Metabolite ID
P11915
Deionized mass
480.1801 Da
Average m/z
481.1828
Average RT
10.9209
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
115
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

115 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)9.759e-15
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)6.563e-11
Glyma.15G192700 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 3Chr15:21029024–21058079 (-)5.985e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)6.508e-13
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)3.052e-11
Glyma.16G196900 hypothetical protein NA 3Chr16:35841279–35846894 (-)1.287e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)8.88e-11
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)8.311e-12
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)8.31e-12
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)8.311e-12
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)6.984e-13
Glyma.15G257100 hypothetical protein AT1G56070:LOS1:Ribosomal protein S5/Elongation factor G/III/V family protein 2Chr15:48661607–48665946 (-)2.513e-13
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 2Chr18:51943730–51947645 (+)9.751e-12
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)9.274e-17
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 2Chr19:1148510–1149495 (+)8.866e-14
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 2Chr19:1155711–1161298 (-)5.105e-20
Glyma.19G012300 hypothetical protein NA 2Chr19:1165111–1173031 (-)5.105e-20
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)6.563e-11
Glyma.20G021900 hypothetical protein AT5G37340:AT5G37340:ZPR1 zinc-finger domain protein 2Chr20:2227480–2247807 (+)5.307e-11
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)6.553e-11
Glyma.01G234100 hypothetical protein AT5G13270:RARE1:Pentatricopeptide repeat (PPR) superfamily protein 1Chr01:56022128–56026001 (+)5.706e-11
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)7.807e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)4.316e-11
Glyma.03G022300 hypothetical protein AT3G60880:DHDPS1:dihydrodipicolinate synthase 1 1Chr03:2331191–2334210 (-)5.503e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)6.053e-13
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)7.492e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)4.454e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)8.362e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.147e-16
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.135e-22
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.534e-16
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)9.614e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)9.614e-12
Glyma.06G131700 hypothetical protein NA 1Chr06:10850105–10855203 (+)1.156e-11
Glyma.06G132100 hypothetical protein NA 1Chr06:10873977–10879178 (-)1.156e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)2.881e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)5.171e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)8.88e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)8.88e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)8.88e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)8.88e-11
Glyma.08G215400 hypothetical protein AT2G22750:AT2G22750:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:17463087–17467014 (+)5.756e-13
Glyma.08G215500 hypothetical protein AT2G22750:AT2G22750:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:17476921–17480079 (+)5.756e-13
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)4.99e-15
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)4.99e-15
Glyma.08G330600 hypothetical protein NA 1Chr08:44828516–44836550 (-)5.929e-11
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)6.602e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)8.835e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)8.297e-18
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)4.37e-13
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)3.143e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)2.363e-15
Glyma.09G269100 hypothetical protein NA 1Chr09:48651429–48653656 (-)3.738e-13
Glyma.09G270000 hypothetical protein AT3G54220:SCR:GRAS family transcription factor 1Chr09:48704737–48708820 (-)3.347e-11
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)8.776e-13
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)6.744e-12
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)2.239e-14
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)8.311e-12
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)8.311e-12
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)8.311e-12
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)2.673e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)8.311e-12
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)8.311e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)2.633e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.494e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.494e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.494e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.494e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.259e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)9.839e-13
Glyma.10G212400 hypothetical protein AT3G12090:TET6:tetraspanin6 1Chr10:44497054–44499043 (-)4.632e-11
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)3.591e-12
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)9.647e-11
Glyma.15G047100 hypothetical protein AT1G71240:AT1G71240:chromosome-partitioning protein, putative (DUF639) 1Chr15:3736217–3746037 (+)1.402e-11
Glyma.15G047800 hypothetical protein AT1G33270:AT1G33270:Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein 1Chr15:3777567–3783739 (+)1.402e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)4.862e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)6.571e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)4.862e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)4.862e-12
Glyma.15G192400 hypothetical protein AT5G49150:GEX2:gamete expressed 2 1Chr15:20964449–20974340 (+)5.985e-12
Glyma.15G192900 hypothetical protein NA 1Chr15:21108370–21110353 (+)5.985e-12
Glyma.15G257500 hypothetical protein NA 1Chr15:48713244–48717192 (+)2.084e-11
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)9.619e-13
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)9.619e-13
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)3.247e-13
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)7.831e-13
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)3.052e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)3.052e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)5.219e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.859e-13
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)2.47e-13
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)9.643e-12
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)3.771e-12
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)1.081e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)2.022e-14
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr16:35831912–35835153 (+)7.479e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)5.08e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)5.08e-12
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)3.334e-12
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)5.257e-12
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)3.334e-12
Glyma.18G100200 hypothetical protein NA 1Chr18:10512806–10522231 (+)3.334e-12
Glyma.18G100300 hypothetical protein NA 1Chr18:10523838–10534676 (+)2.501e-11
Glyma.18G108400 hypothetical protein NA 1Chr18:12370997–12390275 (-)1.757e-11
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)2.209e-11
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)3.34e-12
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr19:472201–476152 (-)2.475e-11
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)4.336e-13
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)9.274e-17
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)1.169e-12
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)7.652e-14
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)5.939e-13
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.03e-13
Glyma.20G021600 PT12 AT1G20860:PHT1;8:phosphate transporter 1;8__AT1G76430:PHT1;9:phosphate transporter 1;9 1Chr20:2196534–2205616 (+)4.108e-11
Glyma.20G022000 hypothetical protein NA 1Chr20:2262949–2267229 (+)5.307e-11