Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P11356

Metabolite ID
P11356
Deionized mass
495.2297 Da
Average m/z
496.2346
Average RT
10.7640
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
118
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

118 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)7.12e-12
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)4.333e-13
Glyma.07G095000 hypothetical protein NA 3Chr07:8843665–8855430 (+)3.824e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)3.302e-12
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)1.022e-11
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)1.273e-11
Glyma.09G231100 hypothetical protein AT5G42970:COP8:Proteasome component (PCI) domain protein 2Chr09:45450922–45457330 (-)4.803e-12
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 2Chr10:48805999–48811533 (-)2.924e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.048e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.048e-12
Glyma.13G224800 hypothetical protein NA 2Chr13:33748627–33756494 (-)9.713e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 2Chr14:5675792–5680343 (+)1.908e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)5.154e-12
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)5.296e-15
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 2Chr18:51943730–51947645 (+)1.291e-12
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)1.522e-12
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 2Chr19:1148510–1149495 (+)7.341e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 2Chr19:1155711–1161298 (-)1.141e-16
Glyma.19G012300 hypothetical protein NA 2Chr19:1165111–1173031 (-)1.141e-16
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)4.333e-13
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)5.383e-11
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)9.723e-12
Glyma.20G112900 hypothetical protein AT2G39210:AT2G39210:Major facilitator superfamily protein 2Chr20:35498179–35500565 (-)5.065e-13
Glyma.01G234100 hypothetical protein AT5G13270:RARE1:Pentatricopeptide repeat (PPR) superfamily protein 1Chr01:56022128–56026001 (+)1.567e-11
Glyma.02G062600 hypothetical protein AT2G23540:AT2G23540:GDSL-like Lipase/Acylhydrolase superfamily protein 1Chr02:5645621–5648965 (+)9.112e-11
Glyma.03G019700 hypothetical protein AT3G61130:GAUT1:galacturonosyltransferase 1 1Chr03:2010835–2018418 (+)7.146e-12
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)6.17e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.92e-16
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.156e-15
Glyma.03G031700 hypothetical protein AT1G79600:AT1G79600:Protein kinase superfamily protein 1Chr03:3567906–3572939 (-)1.451e-12
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)9.687e-11
Glyma.03G169700 hypothetical protein AT2G20240:TRM17:GPI-anchored adhesin-like protein, putative (DUF3741)__AT4G28760:TRM20:methyl-coenzyme M reductase II s… 1Chr03:38442950–38448706 (+)8.676e-11
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)6.229e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)2.133e-13
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.827e-13
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.827e-13
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.381e-14
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.001e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.001e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.001e-13
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)7.667e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)3.235e-14
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)8.235e-14
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)6.281e-16
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.537e-20
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)7.483e-21
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)4.479e-17
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)4.479e-17
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)4.575e-13
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)2.134e-12
Glyma.07G093700 hypothetical protein AT3G18290:BTS:zinc finger protein-like protein 1Chr07:8723740–8734056 (-)9.266e-11
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 1Chr07:9523110–9526319 (+)8.497e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)2.659e-13
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)1.591e-11
Glyma.08G139300 hypothetical protein AT2G22125:CSI1:binding protein 1Chr08:10653279–10664544 (-)4.642e-12
Glyma.08G141100 hypothetical protein AT5G64910:AT5G64910:Serine/Threonine-kinase 1Chr08:10778910–10784589 (-)7.919e-13
Glyma.08G239500 hypothetical protein AT4G09180:FBH2:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:20444715–20447665 (-)6.82e-12
Glyma.08G299800 hypothetical protein NA 1Chr08:41795912–41796546 (+)4.077e-11
Glyma.08G336900 hypothetical protein AT1G55730:CAX5:cation exchanger 5 1Chr08:45376142–45387404 (-)8.753e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)5.078e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)5.862e-12
Glyma.09G230700 hypothetical protein NA 1Chr09:45425332–45429069 (-)3.728e-11
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)1.681e-11
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)1.681e-11
Glyma.10G257500 hypothetical protein NA 1Chr10:48386988–48389180 (-)1.202e-11
Glyma.10G261100 hypothetical protein NA 1Chr10:48628245–48635184 (+)1.541e-11
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)2.376e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)6.469e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)5.362e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)5.362e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.609e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.609e-11
Glyma.12G228000 hypothetical protein AT1G53210:AT1G53210:sodium/calcium exchanger family protein / calcium-binding EF hand family protein 1Chr12:38789187–38797498 (+)2.988e-11
Glyma.12G228300 hypothetical protein AT3G15030:TCP4:TCP family transcription factor 4 1Chr12:38813527–38816237 (-)2.472e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)3.544e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)3.302e-12
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)2.535e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.36e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.36e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.048e-12
Glyma.13G185400 hypothetical protein NA 1Chr13:29936606–29937420 (+)6.412e-11
Glyma.13G224500 hypothetical protein AT1G29750:RKF1:receptor-like kinase in flowers 1 1Chr13:33725180–33735368 (+)9.713e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)1.617e-13
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)1.479e-15
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.379e-14
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)1.286e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)5.154e-12
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)1.775e-11
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)8.794e-15
Glyma.16G057700 hypothetical protein AT3G27180:AT3G27180:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr16:5656328–5663040 (-)9.899e-11
Glyma.16G058000 hypothetical protein AT5G15750:AT5G15750:Alpha-L RNA-binding motif/Ribosomal protein S4 family protein 1Chr16:5674056–5677758 (+)3.077e-11
Glyma.16G058100 hypothetical protein AT5G14180:MPL1:Myzus persicae-induced lipase 1 1Chr16:5685464–5692098 (+)2.092e-14
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)6.796e-14
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)3.827e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)2.238e-20
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)1.184e-14
Glyma.16G142300 hypothetical protein AT4G36850:AT4G36850:PQ-loop repeat family protein / transmembrane family protein 1Chr16:30086178–30091466 (-)5.599e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)2.942e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)2.942e-11
Glyma.16G160900 hypothetical protein NA 1Chr16:32013447–32016235 (+)1.473e-11
Glyma.16G161500 hypothetical protein NA 1Chr16:32076715–32092322 (-)1.202e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.626e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)3.438e-13
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr16:35831912–35835153 (+)2.198e-11
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)7.835e-11
Glyma.16G198600 hypothetical protein AT5G52060:BAG1:BCL-2-associated athano 1 1Chr16:35958085–35960833 (+)2.871e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)4.935e-12
Glyma.17G144400 hypothetical protein NA 1Chr17:11801158–11803913 (+)5.306e-11
Glyma.17G205900 hypothetical protein NA 1Chr17:33578345–33582235 (-)1.524e-12
Glyma.17G206000 hypothetical protein NA 1Chr17:33582328–33583013 (-)1.524e-12
Glyma.17G206100 hypothetical protein NA 1Chr17:33612472–33622199 (-)1.524e-12
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)6.724e-13
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)1.273e-11
Glyma.18G106600 hypothetical protein NA 1Chr18:11947553–11951868 (+)3.975e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)6.696e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)1.522e-12
Glyma.20G100000 Thioredoxin-like fold domain-containing protein MRL7L, chloroplastic AT2G31840:MRL7-L:Thioredoxin superfamily protein 1Chr20:34320945–34324107 (+)3.833e-11
Glyma.20G120200 hypothetical protein NA 1Chr20:36268998–36282456 (-)7.56e-13