Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P11338

Metabolite ID
P11338
Deionized mass
520.2451 Da
Average m/z
521.2529
Average RT
10.7556
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
66
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

66 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)2.255e-12
Glyma.08G183700 Fasciclin-like arabinogalactan protein 19 NA 3Chr08:14738283–14742033 (+)2.046e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)3.908e-15
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)2.297e-12
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)2.392e-13
Glyma.18G107900 hypothetical protein AT1G06490:CalS7:glucan synthase-like 7 3Chr18:12220182–12260477 (+)2.117e-11
Glyma.03G251100 hypothetical protein AT3G04490:AT3G04490:exportin-4 protein 2Chr03:44673965–44702804 (-)1.911e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)2.297e-12
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)2.662e-11
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)3.815e-14
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)2.255e-12
Glyma.01G010400 SLTI248 DEAD-box RNA helicase AT1G31970:STRS1:DEA(D/H)-box RNA helicase family protein 1Chr01:1009200–1013846 (+)6.845e-12
Glyma.01G045600 hypothetical protein NA 1Chr01:5242432–5245038 (-)1.12e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)3.539e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)3.539e-12
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)1.004e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)8.535e-12
Glyma.03G250400 hypothetical protein AT3G04470:AT3G04470:Ankyrin repeat family protein 1Chr03:44616824–44621636 (-)6.241e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)6.174e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)6.174e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)6.174e-12
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)3.221e-11
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)4.235e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.143e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.89e-19
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)5.798e-18
Glyma.05G238600 hypothetical protein AT2G01680:AT2G01680:Ankyrin repeat family protein 1Chr05:41452071–41455695 (+)5.611e-11
Glyma.05G239000 hypothetical protein NA 1Chr05:41489721–41491777 (+)4.882e-15
Glyma.05G239900 hypothetical protein AT1G12400:AT1G12400:Nucleotide excision repair, TFIIH, subunit TTDA 1Chr05:41527555–41529639 (+)1.676e-11
Glyma.05G242500 hypothetical protein NA 1Chr05:41746389–41751249 (-)7.644e-11
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)5.609e-11
Glyma.08G183800 hypothetical protein NA 1Chr08:14744295–14744525 (+)7.774e-11
Glyma.08G184000 hypothetical protein AT2G01080:AT2G01080:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr08:14749219–14752814 (-)1.104e-13
Glyma.08G239500 hypothetical protein AT4G09180:FBH2:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:20444715–20447665 (-)6.85e-13
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)2.802e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.413e-15
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)3.084e-14
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)1.292e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)5.52e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)5.52e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)5.52e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)5.52e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.22e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)5.425e-12
Glyma.10G274700 hypothetical protein AT1G68560:XYL1:alpha-xylosidase 1__AT3G45940:AT3G45940:Glycosyl hydrolases family 31 protein 1Chr10:49769554–49774168 (-)3.754e-12
Glyma.11G182600 hypothetical protein AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein 1Chr11:24998933–25003549 (-)1.179e-11
Glyma.11G182700 hypothetical protein AT1G32250:AT1G32250:Calcium-binding EF-hand family protein 1Chr11:25028353–25031056 (-)9.711e-12
Glyma.11G182800 hypothetical protein AT2G27460:AT2G27460:sec23/sec24 transport family protein 1Chr11:25044939–25052549 (+)6.025e-11
Glyma.11G183200 hypothetical protein AT2G27500:AT2G27500:Glycosyl hydrolase superfamily protein 1Chr11:25070908–25075185 (-)3.588e-12
Glyma.11G183800 hypothetical protein AT5G22450:AT5G22450:spectrin beta chain, brain 1Chr11:25162867–25173439 (-)6.209e-13
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)3.979e-11
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)3.908e-15
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)6.055e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)4.922e-15
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)2.318e-12
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)1.406e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)2.356e-13
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.048e-13
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)2.297e-12
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)2.297e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.754e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)7.638e-11
Glyma.17G214600 hypothetical protein NA 1Chr17:36049053–36054871 (-)1.3e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)3.42e-15
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)2.392e-13
Glyma.18G039500 hypothetical protein AT5G37770:TCH2:EF hand calcium-binding protein family 1Chr18:3218263–3219353 (+)7.826e-14