Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P11109

Metabolite ID
P11109
Deionized mass
490.1790 Da
Average m/z
491.1867
Average RT
10.6710
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
81
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

81 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)3.327e-14
Glyma.06G313500 hypothetical protein NA 3Chr06:50191600–50203098 (-)3.024e-12
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)8.273e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)4.192e-11
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)2.509e-12
Glyma.15G140400 hypothetical protein NA 2Chr15:11495189–11495691 (+)1.787e-11
Glyma.16G213000 hypothetical protein AT1G48380:RHL1:root hair initiation protein root hairless 1 (RHL1) 2Chr16:37118629–37125494 (-)6.331e-11
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)2.555e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)4.619e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)4.619e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.118e-13
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)6.17e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.174e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.174e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.174e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)4.274e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)5.937e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)6.213e-18
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.828e-17
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.079e-14
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.751e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.751e-13
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)2.676e-11
Glyma.06G322000 hypothetical protein AT5G56170:LLG1:LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 1Chr06:51042976–51045446 (-)1.631e-11
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 1Chr08:9065033–9071774 (-)4.383e-11
Glyma.08G117700 hypothetical protein NA 1Chr08:9080318–9084658 (-)6.623e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)4.383e-11
Glyma.08G118500 hypothetical protein NA 1Chr08:9161382–9162471 (+)9.301e-12
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)2.68e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)4.192e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)4.192e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)4.192e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)4.192e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.506e-11
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)2.02e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)3.324e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)3.324e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)3.324e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)3.324e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.482e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)2.18e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)2.18e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)2.18e-11
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)5.958e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.206e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.206e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)4.309e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)4.309e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)2.91e-14
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)5.284e-11
Glyma.14G198100 hypothetical protein NA 1Chr14:46337677–46340654 (+)5.299e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)2.509e-12
Glyma.15G009700 hypothetical protein NA 1Chr15:751766–753795 (+)2.173e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.943e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.87e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.943e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.943e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)8.959e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.093e-11
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)4.049e-14
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)5.274e-12
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)2.682e-11
Glyma.16G105700 hypothetical protein NA 1Chr16:21404554–21412265 (-)8.862e-11
Glyma.16G105800 hypothetical protein NA 1Chr16:21409016–21412087 (-)8.862e-11
Glyma.16G106200 hypothetical protein NA 1Chr16:21463300–21469532 (+)8.862e-11
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)1.901e-13
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)3.327e-14
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)1.029e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)6.43e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)9.93e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)5.492e-13
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)2.107e-12
Glyma.17G212300 hypothetical protein AT5G25310:AT5G25310:Exostosin family protein 1Chr17:35122156–35129564 (-)6.345e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)8.696e-12
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)2.555e-11
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)8.273e-11
Glyma.18G238000 hypothetical protein AT1G01490:AT1G01490:Heavy metal transport/detoxification superfamily protein 1Chr18:52679724–52682816 (+)7.564e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)1.565e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4.426e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4.426e-11
Glyma.19G188200 hypothetical protein NA 1Chr19:44647446–44649620 (-)1.284e-11