Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P10859

Metabolite ID
P10859
Deionized mass
504.2037 Da
Average m/z
505.2120
Average RT
10.5859
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
115
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

115 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.07G068200 hypothetical protein AT4G00310:EDA8:Putative membrane lipoprotein 3Chr07:6146155–6148036 (-)3.228e-14
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)1.081e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 3Chr19:1134716–1143232 (+)3.643e-11
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 2Chr03:1875182–1876855 (+)1.638e-12
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 2Chr03:2007617–2009871 (+)1.728e-14
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 2Chr08:11525692–11536927 (+)7.276e-13
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)9.633e-13
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.583e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.583e-13
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 2Chr14:5675792–5680343 (+)1.803e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)5.774e-12
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)5.844e-12
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)7.685e-13
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)6.976e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)2.286e-11
Glyma.01G017900 hypothetical protein NA 1Chr01:1734474–1735545 (+)2.182e-13
Glyma.01G019000 hypothetical protein AT5G46800:BOU:Mitochondrial substrate carrier family protein 1Chr01:1818232–1821908 (-)1.808e-11
Glyma.01G021000 hypothetical protein NA 1Chr01:2122589–2125447 (+)5.859e-12
Glyma.01G021600 hypothetical protein AT5G65540:AT5G65540:transcription initiation factor TFIID subunit 1Chr01:2189923–2194362 (-)9.903e-13
Glyma.01G021700 hypothetical protein NA 1Chr01:2197811–2200232 (+)2.577e-12
Glyma.01G022000 hypothetical protein NA 1Chr01:2209688–2210849 (-)2.577e-12
Glyma.01G022200 hypothetical protein NA 1Chr01:2212834–2213622 (+)2.577e-12
Glyma.01G034300 hypothetical protein NA 1Chr01:3573149–3579461 (-)3.734e-13
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)7.334e-13
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)6.862e-12
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)2.972e-11
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)5.147e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)1.473e-12
Glyma.03G019700 hypothetical protein AT3G61130:GAUT1:galacturonosyltransferase 1 1Chr03:2010835–2018418 (+)8.772e-13
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)4.825e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.517e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)5.796e-11
Glyma.03G148900 hypothetical protein NA 1Chr03:36449311–36451278 (+)6.639e-11
Glyma.03G149000 hypothetical protein AT2G48010:RKF3:receptor-like kinase in in flowers 3 1Chr03:36454104–36456822 (+)2.297e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)1.285e-13
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)9.128e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)4.637e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)3.331e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)3.484e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)3.484e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)3.144e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.225e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.225e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.225e-12
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)9.901e-12
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)1.055e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)7.27e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.151e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.869e-15
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)2.413e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)2.413e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)2.413e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)3.848e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.233e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.233e-12
Glyma.06G126400 hypothetical protein AT5G53150:AT5G53150:DnaJ heat shock amino-terminal domain protein 1Chr06:10356650–10362151 (-)3.451e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)2.131e-14
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)1.193e-11
Glyma.07G065700 hypothetical protein AT3G61510:ACS1:ACC synthase 1 1Chr07:5923612–5927198 (+)6.688e-12
Glyma.07G068000 hypothetical protein AT3G61460:BRH1: 1Chr07:6128862–6129740 (+)8.49e-11
Glyma.07G068500 hypothetical protein AT3G54980:AT3G54980:Pentatricopeptide repeat (PPR) superfamily protein__AT2G39230:LOJ:LATERAL ORGAN JUNCTION 1Chr07:6184449–6187743 (-)1.34e-11
Glyma.07G069400 hypothetical protein AT2G46020:BRM:transcription regulatory protein SNF2 1Chr07:6270176–6283087 (-)9.276e-11
Glyma.07G070300 hypothetical protein AT2G45910:AT2G45910:U-box domain-containing protein kinase family protein 1Chr07:6364435–6372387 (-)3.709e-12
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)4.079e-13
Glyma.07G209600 hypothetical protein NA 1Chr07:38037644–38043272 (+)9.028e-11
Glyma.08G104600 hypothetical protein AT1G27930:AT1G27930:glucuronoxylan 4-O-methyltransferase-like protein (DUF579) 1Chr08:8045602–8047222 (-)3.702e-11
Glyma.08G107800 AK-HSDH aspartokinase-homoserine dehydrogenase AT4G19710:AK-HSDH II:aspartate kinase-homoserine dehydrogenase ii 1Chr08:8296196–8307328 (-)1.311e-11
Glyma.08G108400 hypothetical protein NA 1Chr08:8326311–8330206 (+)1.311e-11
Glyma.08G109000 SUB1 NA 1Chr08:8364770–8373803 (-)2.131e-11
Glyma.08G110000 hypothetical protein AT3G23840:AT3G23840:HXXXD-type acyl-transferase family protein 1Chr08:8438346–8442806 (-)2.131e-11
Glyma.08G110200 hypothetical protein NA 1Chr08:8471393–8473156 (+)6.864e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)8.826e-14
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)9.677e-13
Glyma.09G202900 hypothetical protein AT5G10560:AT5G10560:Glycosyl hydrolase family protein 1Chr09:42685911–42690981 (-)6.457e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)5.153e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)5.153e-11
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)2.469e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)7.046e-12
Glyma.11G162500 hypothetical protein AT2G40435:AT2G40435:transcription factor SCREAM-like protein 1Chr11:15087390–15090683 (-)5.592e-12
Glyma.12G059300 hypothetical protein NA 1Chr12:4289989–4292215 (-)4.276e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)3.109e-13
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)3.109e-13
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.081e-11
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)9.67e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.924e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.924e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.583e-13
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)8.574e-12
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)2.867e-13
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)2.327e-15
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)4.536e-14
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)7.713e-11
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)7.713e-11
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)1.19e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)5.774e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.004e-14
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)4.368e-14
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.004e-14
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.004e-14
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.242e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.092e-14
Glyma.16G105700 hypothetical protein NA 1Chr16:21404554–21412265 (-)4.174e-11
Glyma.16G105800 hypothetical protein NA 1Chr16:21409016–21412087 (-)4.174e-11
Glyma.16G106200 hypothetical protein NA 1Chr16:21463300–21469532 (+)4.174e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.201e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)6.028e-11
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)5.844e-12
Glyma.18G091600 hypothetical protein NA 1Chr18:9165090–9166656 (-)3.004e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)1.79e-11
Glyma.18G251400 hypothetical protein NA 1Chr18:53754942–53759244 (-)4.476e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)1.071e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)6.579e-12
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)2.286e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)9.369e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)9.368e-11