Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P10779

Metabolite ID
P10779
Deionized mass
510.2215 Da
Average m/z
511.2252
Average RT
10.5640
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
42
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

42 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 4Chr19:3303658–3312907 (-)3.052e-16
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)3.052e-16
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)6.139e-13
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)3.638e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)8.89e-17
Glyma.16G172500 hypothetical protein AT3G59140:ABCC10:multidrug resistance-associated protein 14 2Chr16:33322352–33330062 (+)1.005e-14
Glyma.19G026200 hypothetical protein AT5G39420:cdc2cAt:CDC2C 2Chr19:3274957–3281320 (+)7.305e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)2.709e-11
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)6.704e-12
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)1.377e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.081e-14
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)8.825e-11
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)8.825e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)6.682e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.781e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.713e-12
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)2.388e-12
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)6.14e-13
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)6.14e-13
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)7.875e-12
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.763e-13
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)2.29e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)3.638e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)3.638e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)3.638e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)3.638e-11
Glyma.08G211100 GLYI-9 putative lactoylglutathione lyase AT1G80160:GLYI7:Lactoylglutathione lyase / glyoxalase I family protein 1Chr08:17046316–17048640 (-)2.876e-11
Glyma.09G065900 hypothetical protein NA 1Chr09:6419980–6421918 (+)2.526e-12
Glyma.09G066000 hypothetical protein NA 1Chr09:6431656–6439981 (-)2.526e-12
Glyma.09G066200 hypothetical protein AT5G57030:LUT2:Lycopene beta/epsilon cyclase protein 1Chr09:6475361–6486120 (+)2.526e-12
Glyma.11G117500 hypothetical protein NA 1Chr11:8932743–8933846 (-)7.497e-12
Glyma.11G118200 hypothetical protein NA 1Chr11:8979431–8983783 (+)7.446e-12
Glyma.12G054700 hypothetical protein AT3G45140:LOX2:lipoxygenase 2 1Chr12:3949453–3957386 (-)4.265e-11
Glyma.15G047100 hypothetical protein AT1G71240:AT1G71240:chromosome-partitioning protein, putative (DUF639) 1Chr15:3736217–3746037 (+)9.276e-11
Glyma.15G047800 hypothetical protein AT1G33270:AT1G33270:Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein 1Chr15:3777567–3783739 (+)9.276e-11
Glyma.15G048200 hypothetical protein AT1G25260:AT1G25260:Ribosomal protein L10 family protein 1Chr15:3812816–3815263 (+)7.604e-11
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)1.524e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)1.524e-12
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)4.456e-11
Glyma.16G142300 hypothetical protein AT4G36850:AT4G36850:PQ-loop repeat family protein / transmembrane family protein 1Chr16:30086178–30091466 (-)1.63e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.706e-17
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.706e-17