Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P10753

Metabolite ID
P10753
Deionized mass
409.1819 Da
Average m/z
410.1873
Average RT
10.5543
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
47
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

47 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)1.713e-13
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)1.543e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 2Chr12:36289704–36295084 (-)2.545e-14
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.58e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)5.248e-12
Glyma.02G303600 hypothetical protein NA 1Chr02:47883626–47887124 (-)7.972e-11
Glyma.02G303700 hypothetical protein NA 1Chr02:47892900–47896207 (+)7.972e-11
Glyma.02G304000 hypothetical protein AT1G51350:AT1G51350:ARM repeat superfamily protein 1Chr02:47908136–47915999 (-)7.972e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)1.62e-12
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)2.716e-13
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)6.714e-13
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)4.535e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)8.17e-12
Glyma.06G081600 hypothetical protein AT5G11490:AT5G11490:adaptin family protein 1Chr06:6273644–6283819 (+)1.315e-11
Glyma.06G085900 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr06:6617102–6622706 (-)1.305e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)2.036e-12
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)1.533e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)9.805e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.832e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)5.762e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)5.762e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.745e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.745e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)3.786e-15
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)6.471e-14
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)9.28e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)9.28e-12
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)1.291e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)6.99e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)6.99e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)6.99e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)3.422e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)3.91e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)3.909e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)2.069e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.519e-11
Glyma.16G041700 hypothetical protein AT1G64770:PnsB2:NDH-dependent cyclic electron flow 1 1Chr16:3909907–3912569 (+)7.626e-11
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)7.222e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)7.727e-12
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)5.236e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)8.052e-13
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)1.543e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)2.494e-14
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)2.494e-14
Glyma.17G135100 hypothetical protein AT1G62840:AT1G62840:ankyrin repeat/KH domain protein (DUF1442) 1Chr17:10870710–10872285 (+)1.184e-11
Glyma.17G218800 Peptidyl-prolyl cis-trans isomerase CYP57 AT4G33060:AT4G33060:Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 1Chr17:37027171–37033720 (-)2.348e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)8.253e-13