Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P10692

Metabolite ID
P10692
Deionized mass
352.0405 Da
Average m/z
353.0477
Average RT
10.5286
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
129
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

129 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)4.648e-14
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)9.031e-11
Glyma.01G045600 hypothetical protein NA 3Chr01:5242432–5245038 (-)4.95e-14
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 3Chr16:30652378–30659548 (+)4.751e-11
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)5.465e-11
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)4.002e-13
Glyma.12G054700 hypothetical protein AT3G45140:LOX2:lipoxygenase 2 2Chr12:3949453–3957386 (-)1.267e-13
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.365e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.365e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.334e-14
Glyma.18G100200 hypothetical protein NA 2Chr18:10512806–10522231 (+)6.518e-14
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)7.376e-16
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 2Chr19:1148510–1149495 (+)9.85e-13
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 2Chr19:1155711–1161298 (-)4.059e-18
Glyma.19G012300 hypothetical protein NA 2Chr19:1165111–1173031 (-)4.059e-18
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)9.031e-11
Glyma.01G045400 hypothetical protein NA 1Chr01:5140834–5144197 (-)4.755e-13
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)4.95e-14
Glyma.01G099100 hypothetical protein NA 1Chr01:33017228–33023840 (+)9.226e-11
Glyma.01G099600 hypothetical protein AT3G53930:AT3G53930:Protein kinase superfamily protein__AT2G37840:AT2G37840:Protein kinase superfamily protein 1Chr01:33115843–33125726 (-)9.226e-11
Glyma.01G099900 hypothetical protein NA 1Chr01:33275414–33282430 (+)9.226e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)2.566e-14
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)2.566e-14
Glyma.02G081600 hypothetical protein NA 1Chr02:7054190–7055955 (-)6.681e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)3.152e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)5.576e-12
Glyma.03G031700 hypothetical protein AT1G79600:AT1G79600:Protein kinase superfamily protein 1Chr03:3567906–3572939 (-)2.08e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)4.235e-12
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)1.352e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)1.459e-12
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)7.098e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.324e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.324e-11
Glyma.06G131700 hypothetical protein NA 1Chr06:10850105–10855203 (+)1.153e-12
Glyma.06G132100 hypothetical protein NA 1Chr06:10873977–10879178 (-)1.153e-12
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)1.962e-12
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)1.141e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)1.141e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)6.387e-12
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)1.124e-11
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)2.374e-11
Glyma.06G317900 hypothetical protein AT5G51400:AT5G51400:PLAC8 family protein 1Chr06:50645095–50649256 (+)2.242e-13
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)6.296e-11
Glyma.08G136700 hypothetical protein NA 1Chr08:10457207–10460163 (-)1.578e-11
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)3.871e-13
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)3.871e-13
Glyma.08G330600 hypothetical protein NA 1Chr08:44828516–44836550 (-)7.478e-11
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)4.25e-13
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)2.541e-12
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.32e-14
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)6.195e-11
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)3.826e-12
Glyma.09G238800 hypothetical protein AT3G28910:MYB30:myb domain protein 30 1Chr09:46114284–46116303 (-)3.897e-11
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 1Chr09:46835469–46838091 (-)1.016e-11
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)1.249e-11
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)5.703e-11
Glyma.11G061800 hypothetical protein NA 1Chr11:4632831–4633552 (+)7.919e-11
Glyma.11G090300 hypothetical protein AT4G19190:AT4G19190:zinc knuckle (CCHC-type) family protein 1Chr11:6849007–6855564 (+)7.694e-11
Glyma.11G165900 hypothetical protein AT5G58510:AT5G58510:Rab3 GTPase-activating protein catalytic protein 1Chr11:15890687–15912099 (-)2.293e-11
Glyma.11G166100 hypothetical protein AT2G30110:UBA1:ubiquitin-activating enzyme 1 1Chr11:15941545–15948932 (+)2.293e-11
Glyma.11G166200 hypothetical protein NA 1Chr11:15951003–15963149 (-)2.293e-11
Glyma.11G167100 hypothetical protein NA 1Chr11:16310396–16317417 (+)2.293e-11
Glyma.11G167400 hypothetical protein NA 1Chr11:16491689–16494364 (-)2.293e-11
Glyma.11G167800 hypothetical protein NA 1Chr11:16649420–16666371 (+)2.293e-11
Glyma.11G169500 hypothetical protein NA 1Chr11:18001828–18002310 (+)2.293e-11
Glyma.11G169700 hypothetical protein AT1G07110:F2KP:fructose-2,6-bisphosphatase 1Chr11:18034188–18046104 (-)2.293e-11
Glyma.11G170100 hypothetical protein NA 1Chr11:18127748–18139401 (-)2.293e-11
Glyma.11G170300 hypothetical protein AT3G47340:ASN1:glutamine-dependent asparagine synthase 1 1Chr11:18242402–18247271 (+)2.293e-11
Glyma.11G170700 hypothetical protein AT5G23880:CPSF100:cleavage and polyadenylation specificity factor 100 1Chr11:18313678–18328202 (-)2.293e-11
Glyma.11G170800 hypothetical protein NA 1Chr11:18343004–18346283 (+)2.293e-11
Glyma.11G170900 hypothetical protein AT5G58610:AT5G58610:PHD finger transcription factor 1Chr11:18345392–18359356 (-)2.293e-11
Glyma.11G171200 hypothetical protein AT5G58610:AT5G58610:PHD finger transcription factor 1Chr11:18475119–18484515 (+)4.427e-12
Glyma.11G171500 hypothetical protein NA 1Chr11:18629660–18631015 (+)4.427e-12
Glyma.11G171800 hypothetical protein NA 1Chr11:18663180–18666591 (-)4.427e-12
Glyma.11G172200 hypothetical protein AT1G07110:F2KP:fructose-2,6-bisphosphatase 1Chr11:18702580–18708310 (+)4.427e-12
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)6.961e-14
Glyma.12G054500 hypothetical protein NA 1Chr12:3938604–3943724 (+)2.063e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)5.535e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)3.604e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)3.604e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.365e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)2.962e-12
Glyma.13G185400 hypothetical protein NA 1Chr13:29936606–29937420 (+)6.294e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.158e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.334e-14
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)9.726e-15
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.652e-13
Glyma.16G019400 SHAT1-5 NAC domain-containing protein 43-like NA 1Chr16:1725643–1728272 (+)2.722e-11
Glyma.16G024600 hypothetical protein AT1G01320:AT1G01320:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:2374161–2391216 (-)4.205e-11
Glyma.16G024800 hypothetical protein AT4G31010:AT4G31010:RNA-binding CRS1 / YhbY (CRM) domain-containing protein 1Chr16:2407161–2410997 (-)8.749e-12
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)1.022e-14
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)1.022e-14
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)3.781e-12
Glyma.16G051100 hypothetical protein NA 1Chr16:4896279–4898219 (-)6.27e-11
Glyma.16G056900 hypothetical protein AT3G27110:AT3G27110:Peptidase family M48 family protein 1Chr16:5567105–5572944 (+)6.7e-11
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)1.609e-20
Glyma.16G057700 hypothetical protein AT3G27180:AT3G27180:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr16:5656328–5663040 (-)2.563e-15
Glyma.16G058000 hypothetical protein AT5G15750:AT5G15750:Alpha-L RNA-binding motif/Ribosomal protein S4 family protein 1Chr16:5674056–5677758 (+)1.197e-13
Glyma.16G058100 hypothetical protein AT5G14180:MPL1:Myzus persicae-induced lipase 1 1Chr16:5685464–5692098 (+)6.954e-17
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)4.47e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)5.483e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)1.562e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)1.239e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.297e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)5.384e-11
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)2.891e-11
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)2.891e-11
Glyma.16G159100 hypothetical protein NA 1Chr16:31889835–31894662 (+)5.635e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)7.646e-11
Glyma.18G021700 hypothetical protein NA 1Chr18:1590986–1596262 (-)4.675e-11
Glyma.18G091600 hypothetical protein NA 1Chr18:9165090–9166656 (-)1.834e-11
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)6.518e-14
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)6.103e-14
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)6.518e-14
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)4.328e-11
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)1.005e-11
Glyma.18G301600 hypothetical protein AT2G33490:AT2G33490:hydroxyproline-rich glycoprotein family protein 1Chr18:57939468–57945328 (+)9.352e-12
Glyma.18G301900 hypothetical protein AT5G13190:GILP:GSH-induced LITAF domain protein 1Chr18:57953323–57956369 (-)4.151e-13
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)8.926e-11
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)8.034e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)7.376e-16
Glyma.19G129500 hypothetical protein AT2G41160:AT2G41160:Ubiquitin-associated (UBA) protein 1Chr19:38884116–38901744 (-)5.694e-11
Glyma.20G007700 hypothetical protein NA 1Chr20:704850–710565 (-)9.373e-11
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)8.528e-11
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)4.84e-12
Glyma.20G105100 hypothetical protein NA 1Chr20:34737596–34737811 (-)1.043e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)7.528e-11
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)2.653e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)3.191e-11