Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P10505

Metabolite ID
P10505
Deionized mass
472.2158 Da
Average m/z
473.2258
Average RT
10.4617
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
58
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

58 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 2Chr08:9435391–9437279 (+)3.478e-13
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)3.478e-13
Glyma.16G105100 hypothetical protein NA 2Chr16:21259552–21267517 (-)5.029e-11
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)3.074e-12
Glyma.01G034300 hypothetical protein NA 1Chr01:3573149–3579461 (-)1.025e-11
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)9.459e-13
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)9.946e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.66e-11
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)1.218e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)3.215e-11
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 1Chr04:7187985–7192897 (+)9.641e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)7.572e-11
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)8.344e-12
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)8.344e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.104e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.395e-16
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.595e-13
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)1.887e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)3.478e-13
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)3.478e-13
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)3.478e-13
Glyma.08G150000 hypothetical protein AT2G32850:AT2G32850:Protein kinase superfamily protein 1Chr08:11518864–11523442 (-)8.704e-11
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 1Chr08:11525692–11536927 (+)3.827e-12
Glyma.08G189500 hypothetical protein NA 1Chr08:15206364–15212242 (+)3.692e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)7.748e-13
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)1.874e-12
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)1.874e-12
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)4.978e-12
Glyma.11G065000 hypothetical protein AT4G36730:GBF1:G-box binding factor 1 1Chr11:4916855–4922192 (+)1.227e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)5.509e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)5.509e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)6.271e-12
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)5.652e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)3.859e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.448e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)3.448e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)3.448e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)3.425e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)9.109e-11
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)1.298e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.224e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.003e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.224e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.224e-12
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)5.209e-12
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)3.236e-12
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)3.075e-12
Glyma.16G112600 hypothetical protein NA 1Chr16:25015407–25020098 (-)9.627e-13
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)5.801e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)7.134e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)4.083e-12
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)4.58e-12
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)3.571e-11
Glyma.18G219800 hypothetical protein NA 1Chr18:50667312–50671457 (+)3.034e-11
Glyma.18G251400 hypothetical protein NA 1Chr18:53754942–53759244 (-)9.72e-11
Glyma.18G266400 hypothetical protein AT3G29390:RIK:RS2-interacting KH protein 1Chr18:55076548–55086297 (+)1.513e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)4.662e-12
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)3.069e-11