Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P10478

Metabolite ID
P10478
Deionized mass
119.0719 Da
Average m/z
120.0794
Average RT
10.4545
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
63
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

63 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G143700 hypothetical protein AT3G50830:COR413-PM2:cold-regulated 413-plasma membrane 2 4Chr16:30388030–30390647 (-)1.268e-11
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)1.454e-11
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)2.47e-11
Glyma.16G138800 hypothetical protein NA 2Chr16:29609432–29615000 (+)8.182e-13
Glyma.16G144200 hypothetical protein AT3G50380:AT3G50380:vacuolar protein sorting-associated protein, putative (DUF1162) 2Chr16:30434508–30475458 (-)1.741e-12
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 2Chr16:30514629–30519598 (+)1.114e-18
Glyma.16G145100 hypothetical protein NA 2Chr16:30578388–30581421 (-)8.723e-22
Glyma.16G145200 hypothetical protein NA 2Chr16:30586018–30588859 (-)8.413e-17
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)5.717e-13
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)4.142e-11
Glyma.03G019700 hypothetical protein AT3G61130:GAUT1:galacturonosyltransferase 1 1Chr03:2010835–2018418 (+)2.02e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.166e-12
Glyma.03G135300 hypothetical protein NA 1Chr03:35092248–35097578 (+)2.04e-11
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)2.109e-11
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)6.376e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)2.791e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)7.864e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.915e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)5.324e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.728e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.728e-11
Glyma.08G188000 hypothetical protein AT1G22930:AT1G22930:T-complex protein 11 1Chr08:15072032–15079757 (-)4.854e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)6.139e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)5.583e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)5.583e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)1.992e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)1.143e-15
Glyma.14G178600 hypothetical protein NA 1Chr14:43963455–43970275 (+)2.787e-11
Glyma.14G178700 hypothetical protein NA 1Chr14:43978407–43980052 (+)2.787e-11
Glyma.14G178800 hypothetical protein AT1G28210:ATJ1:DNAJ heat shock family protein 1Chr14:43987725–44003499 (-)2.787e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)5.561e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)9.625e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)5.561e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)5.561e-11
Glyma.15G212800 hypothetical protein AT4G16340:SPK1:guanyl-nucleotide exchange factors;GTPase binding;GTP binding protein 1Chr15:33408140–33467420 (+)8.194e-11
Glyma.15G233600 hypothetical protein NA 1Chr15:43971478–43972713 (+)6.881e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)2.47e-11
Glyma.16G138400 hypothetical protein NA 1Chr16:29560913–29562163 (+)8.417e-12
Glyma.16G140700 hypothetical protein NA 1Chr16:29846716–29852078 (-)1.853e-11
Glyma.16G140800 hypothetical protein AT3G50690:AT3G50690:Leucine-rich repeat (LRR) family protein 1Chr16:29854784–29858843 (-)1.284e-12
Glyma.16G141300 hypothetical protein AT4G36710:HAM4:GRAS family transcription factor 1Chr16:29937044–29939337 (+)2.905e-15
Glyma.16G141600 hypothetical protein AT5G66710:AT5G66710:Protein kinase superfamily protein__AT3G50720:AT3G50720:Protein kinase superfamily protein 1Chr16:29970884–29978773 (-)2.905e-15
Glyma.16G142800 hypothetical protein AT2G23760:BLH4:BEL1-like homeodomain 4 1Chr16:30201467–30210093 (+)1.515e-11
Glyma.16G143100 hypothetical protein AT2G23740:SUVR5:histone-lysine N-methyltransferase SUVR5 1Chr16:30245352–30261255 (-)1.515e-11
Glyma.16G143200 hypothetical protein AT5G66600:AT5G66600:electron transporter, putative (Protein of unknown function, DUF547) 1Chr16:30273151–30278680 (+)1.515e-11
Glyma.16G143600 hypothetical protein AT3G50820:PSBO2:photosystem II subunit O-2 1Chr16:30379885–30382483 (-)1.515e-11
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)5.042e-19
Glyma.16G144300 hypothetical protein NA 1Chr16:30443185–30446450 (+)1.741e-12
Glyma.16G144900 hypothetical protein AT2G23540:AT2G23540:GDSL-like Lipase/Acylhydrolase superfamily protein 1Chr16:30549575–30553059 (+)1.377e-14
Glyma.16G145300 hypothetical protein AT2G35780:scpl26:serine carboxypeptidase-like 26__AT3G07990:SCPL27:serine carboxypeptidase-like 27 1Chr16:30604586–30608656 (+)1.968e-12
Glyma.16G145400 hypothetical protein AT3G12090:TET6:tetraspanin6 1Chr16:30624348–30627475 (+)2.649e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)8.723e-22
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)5.717e-13
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)1.87e-20
Glyma.16G147400 hypothetical protein NA 1Chr16:30817535–30821568 (+)1.54e-11
Glyma.18G265500 hypothetical protein AT5G39250:AT5G39250:F-box family protein 1Chr18:55019514–55022070 (-)3.913e-11
Glyma.18G266400 hypothetical protein AT3G29390:RIK:RS2-interacting KH protein 1Chr18:55076548–55086297 (+)8.192e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)4.3e-11
Glyma.18G301900 hypothetical protein AT5G13190:GILP:GSH-induced LITAF domain protein 1Chr18:57953323–57956369 (-)4.172e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)7.266e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)7.266e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)8.996e-12
Glyma.20G129900 hypothetical protein NA 1Chr20:37091399–37092697 (-)2.092e-11