Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P10397

Metabolite ID
P10397
Deionized mass
973.3105 Da
Average m/z
974.3101
Average RT
10.4289
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
136
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

136 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)6.83e-13
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)7.593e-12
Glyma.01G045600 hypothetical protein NA 3Chr01:5242432–5245038 (-)2.575e-12
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)7.594e-12
Glyma.08G300400 hypothetical protein AT2G02910:AT2G02910:transmembrane protein (DUF616) 3Chr08:41830891–41843406 (-)1.262e-11
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)8.385e-12
Glyma.05G149900 hypothetical protein NA 2Chr05:34389242–34393621 (-)5.445e-13
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)6.099e-13
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)2.861e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)2.861e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)2.861e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)6.712e-13
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.54e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.54e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)3.844e-14
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 2Chr19:1148510–1149495 (+)5.575e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)7.593e-12
Glyma.01G045400 hypothetical protein NA 1Chr01:5140834–5144197 (-)1.13e-11
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)2.575e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)3.159e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)3.159e-11
Glyma.02G109400 hypothetical protein NA 1Chr02:10495046–10497626 (-)5.084e-11
Glyma.02G109900 hypothetical protein AT2G03150:emb1579:ATP/GTP-binding protein family 1Chr02:10547851–10557930 (+)5.084e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)2.554e-13
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)6.696e-13
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)5.273e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)4.131e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)6.214e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)7.376e-16
Glyma.04G237000 hypothetical protein AT1G31910:AT1G31910:GHMP kinase family protein 1Chr04:50558708–50569783 (+)1.522e-11
Glyma.04G237200 hypothetical protein AT3G52210:AT3G52210:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr04:50576216–50582296 (-)1.522e-11
Glyma.04G237500 hypothetical protein AT5G15940:AT5G15940:NAD(P)-binding Rossmann-fold superfamily protein__AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold … 1Chr04:50604264–50609423 (+)1.522e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)7.913e-11
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)8.333e-13
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)4.059e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.522e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.796e-12
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)1.579e-12
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)9.338e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)9.338e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)9.338e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.262e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.262e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)7.594e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)7.594e-12
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)2.175e-12
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.02e-11
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)6.792e-11
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)6.792e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)1.967e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.832e-14
Glyma.08G299800 hypothetical protein NA 1Chr08:41795912–41796546 (+)4.169e-11
Glyma.08G300000 hypothetical protein NA 1Chr08:41812728–41812868 (+)1.262e-11
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)2.654e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)2.079e-12
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)3.006e-12
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)9.77e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)4.352e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)4.625e-12
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)3.95e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)1.961e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)1.961e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)2.861e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)2.861e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)2.861e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)2.861e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)2.861e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.425e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.425e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.425e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.425e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)9.853e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)9.246e-13
Glyma.10G274700 hypothetical protein AT1G68560:XYL1:alpha-xylosidase 1__AT3G45940:AT3G45940:Glycosyl hydrolases family 31 protein 1Chr10:49769554–49774168 (-)5.051e-12
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)1.643e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)6.875e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)6.875e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)6.875e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)6.875e-11
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)4.683e-12
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)2.618e-12
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)2.618e-12
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)2.618e-12
Glyma.11G161900 hypothetical protein NA 1Chr11:14992307–14994409 (-)6.236e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)3.206e-13
Glyma.12G054700 hypothetical protein AT3G45140:LOX2:lipoxygenase 2 1Chr12:3949453–3957386 (-)4.369e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.7e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.7e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)9.628e-14
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)9.628e-14
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)6.585e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.54e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.54e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.196e-11
Glyma.13G142200 hypothetical protein AT1G33410:SAR1:SUPPRESSOR OF AUXIN RESISTANCE1 1Chr13:25483702–25502265 (+)3.6e-13
Glyma.13G142500 hypothetical protein NA 1Chr13:25548232–25550097 (+)1.065e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)5.149e-11
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)1.23e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)3.955e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)3.955e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)3.955e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)6.078e-13
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)3.828e-13
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)1.832e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)2.406e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)6.748e-13
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)3.796e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)5.569e-13
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)5.569e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.449e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)5.826e-13
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)4.434e-12
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)5.169e-12
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)2.737e-11
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)5.323e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)3.988e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)4.515e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)3.779e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)5.474e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)1.33e-12
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)1.082e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)7.884e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)9.789e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)7.4e-13
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)7.4e-13
Glyma.17G135100 hypothetical protein AT1G62840:AT1G62840:ankyrin repeat/KH domain protein (DUF1442) 1Chr17:10870710–10872285 (+)4.249e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)6.271e-13
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)2.271e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)3.844e-14
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.058e-15
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.058e-15
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)5.878e-12
Glyma.19G246100 hypothetical protein NA 1Chr19:49285339–49287223 (+)7.232e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)8.632e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)4.003e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)1.073e-11