Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P10372

Metabolite ID
P10372
Deionized mass
118.0984 Da
Average m/z
119.1055
Average RT
10.4241
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
59
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

59 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)5.007e-12
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)2.464e-13
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)2.464e-13
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)2.464e-13
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)2.145e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)3.775e-12
Glyma.15G140400 hypothetical protein NA 2Chr15:11495189–11495691 (+)6.519e-14
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)5.942e-12
Glyma.05G233500 hypothetical protein NA 1Chr05:41066769–41067350 (-)1.681e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)7.225e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.14e-14
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.856e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.857e-11
Glyma.06G275800 hypothetical protein AT2G30980:SKdZeta:SHAGGY-related protein kinase dZeta 1Chr06:46677753–46682900 (-)1.497e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)6.883e-12
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)1.051e-12
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)6.883e-12
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)6.883e-12
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)1.051e-12
Glyma.06G292400 hypothetical protein AT4G28320:MAN5:Glycosyl hydrolase superfamily protein 1Chr06:48130296–48134955 (+)2.441e-11
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 1Chr06:48170133–48173010 (-)2.191e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)5.21e-13
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)1.703e-13
Glyma.07G136100 hypothetical protein NA 1Chr07:16113273–16117600 (+)5.669e-11
Glyma.07G136500 hypothetical protein AT3G53830:AT3G53830:Regulator of chromosome condensation (RCC1) family protein 1Chr07:16157535–16169721 (+)5.669e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)3.721e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)6.689e-16
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)9.939e-15
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)1.452e-11
Glyma.09G270000 hypothetical protein AT3G54220:SCR:GRAS family transcription factor 1Chr09:48704737–48708820 (-)3.188e-11
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)4.351e-12
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)1.395e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)2.464e-13
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)2.464e-13
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)2.464e-13
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)2.971e-13
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)2.464e-13
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)2.464e-13
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)1.353e-12
Glyma.11G119600 hypothetical protein AT2G16130:PMT2:polyol/monosaccharide transporter 2 1Chr11:9127497–9129972 (-)5.998e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)5.542e-14
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)5.542e-14
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 1Chr12:34708678–34710549 (+)9.461e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)5.007e-12
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)3.117e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)8.627e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)8.627e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)8.627e-11
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)3.642e-12
Glyma.15G049000 hypothetical protein NA 1Chr15:3866108–3867740 (+)4.016e-11
Glyma.15G049800 hypothetical protein NA 1Chr15:3927843–3933656 (-)2.061e-11
Glyma.15G140500 hypothetical protein NA 1Chr15:11496139–11502209 (-)7.197e-13
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)1.339e-16
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)3.145e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.198e-11
Glyma.17G135100 hypothetical protein AT1G62840:AT1G62840:ankyrin repeat/KH domain protein (DUF1442) 1Chr17:10870710–10872285 (+)1.785e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)7.014e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4.244e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4.244e-11