Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P10200

Metabolite ID
P10200
Deionized mass
112.0874 Da
Average m/z
113.0951
Average RT
10.3793
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
61
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

61 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.129e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)1.746e-14
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.597e-17
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.597e-17
Glyma.13G184500 hypothetical protein NA 2Chr13:29829471–29834027 (+)5.889e-13
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 2Chr14:6037810–6041899 (+)3.319e-22
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)7.989e-12
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)2.804e-12
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)7.77e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)2.4e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)2.4e-12
Glyma.02G063200 hypothetical protein NA 1Chr02:5680261–5682907 (-)8.963e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)4.609e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)1.797e-11
Glyma.03G001400 hypothetical protein AT2G38610:AT2G38610:RNA-binding KH domain-containing protein 1Chr03:160599–165525 (+)8.393e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)4.388e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)4.908e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)2.173e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.79e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)1.758e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)3.324e-12
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)7.558e-11
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)7.558e-11
Glyma.05G232800 hypothetical protein AT3G18500:AT3G18500:DNAse I-like superfamily protein 1Chr05:41022747–41030067 (-)4.951e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)5.135e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.448e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)8.851e-12
Glyma.08G109700 GmJ1 AT4G13830:J20:DNAJ-like 20 1Chr08:8419650–8422508 (+)6.462e-12
Glyma.08G111700 hypothetical protein NA 1Chr08:8604527–8606424 (-)2.892e-13
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.129e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.129e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.129e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.129e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.8e-11
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)8.764e-11
Glyma.12G098200 hypothetical protein AT2G32480:ARASP:chloroplastic membrane metallo proteases__AT1G05140:AT1G05140:Peptidase M50 family protein 1Chr12:8452063–8456493 (+)6.342e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)5.805e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)5.805e-11
Glyma.13G103200 hypothetical protein AT5G20600:AT5G20600:ribosomal RNA processing-like protein 1Chr13:21822387–21825567 (-)4.249e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.746e-14
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.364e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.364e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.597e-17
Glyma.13G185400 hypothetical protein NA 1Chr13:29936606–29937420 (+)1.375e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)8.117e-11
Glyma.14G071600 hypothetical protein AT1G27620:AT1G27620:HXXXD-type acyl-transferase family protein 1Chr14:6016839–6019954 (+)7.386e-19
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)3.319e-22
Glyma.14G071900 hypothetical protein AT1G19650:AT1G19650:Sec14p-like phosphatidylinositol transfer family protein__AT1G75370:AT1G75370:Sec14p-like phosphati… 1Chr14:6043655–6049030 (+)3.93e-13
Glyma.14G072200 Ipk1 AT5G42810:IPK1:inositol-pentakisphosphate 2-kinase 1__AT1G22100:AT1G22100:Inositol-pentakisphosphate 2-kinase family pr… 1Chr14:6059598–6063755 (-)1.063e-13
Glyma.14G072600 hypothetical protein NA 1Chr14:6097297–6102480 (-)1.216e-11
Glyma.14G073100 hypothetical protein AT1G19600:AT1G19600:pfkB-like carbohydrate kinase family protein 1Chr14:6138618–6142249 (-)6.205e-11
Glyma.14G073200 hypothetical protein NA 1Chr14:6151199–6153371 (-)6.205e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)5.483e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)8.124e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)5.747e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)4.554e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.832e-11
Glyma.18G205800 H-1 ferritin light chain AT5G01600:FER1:ferretin 1 1Chr18:48947662–48950635 (-)9.818e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.72e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.72e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)6.219e-11