P10054
Metabolite ID
P10054
Deionized mass
444.2703 Da
Average m/z
445.2782
Average RT
10.3424
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
114
GWAS result file
Available
Candidate annotations
Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations
GWAS Evidence
Dataset: indexed GWAS records.
SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.
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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage
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Associated genes
114 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.
| Gene ID | Alias | Description | Arabidopsis ortholog | Supporting SNP records | Gene interval (1-based) | Minimum P |
|---|---|---|---|---|---|---|
| Glyma.16G111500 | hypothetical protein | AT4G35500:AT4G35500:Protein kinase superfamily protein | 4 | Chr16:24626024–24635513 (+) | 1.87e-13 | |
| Glyma.19G027000 | hypothetical protein | NA | 4 | Chr19:3335896–3343744 (+) | 2.096e-17 | |
| Glyma.03G001500 | B15-3-5 | AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase | 3 | Chr03:169480–172727 (+) | 1.092e-11 | |
| Glyma.13G134400 | hypothetical protein | AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein | 3 | Chr13:24677399–24693129 (-) | 4.849e-13 | |
| Glyma.16G209300 | hypothetical protein | NA | 3 | Chr16:36856833–36863994 (-) | 4.864e-12 | |
| Glyma.16G210200 | hypothetical protein | NA | 3 | Chr16:36933402–36938940 (+) | 3.843e-11 | |
| Glyma.16G210300 | hypothetical protein | AT1G73340:AT1G73340:Cytochrome P450 superfamily protein | 3 | Chr16:36943073–36948828 (+) | 9.914e-13 | |
| Glyma.03G018800 | hypothetical protein | AT2G45680:TCP9:TCP family transcription factor | 2 | Chr03:1875182–1876855 (+) | 3.111e-13 | |
| Glyma.13G135700 | hypothetical protein | NA | 2 | Chr13:24812720–24818735 (+) | 5.768e-12 | |
| Glyma.13G135800 | hypothetical protein | AT5G02800:CDL1:Protein kinase superfamily protein | 2 | Chr13:24820151–24823999 (-) | 5.767e-12 | |
| Glyma.14G201600 | hypothetical protein | NA | 2 | Chr14:46703283–46706500 (+) | 8.423e-12 | |
| Glyma.16G031600 | hypothetical protein | NA | 2 | Chr16:2964569–2985013 (+) | 4.903e-11 | |
| Glyma.17G216700 | hypothetical protein | AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein | 2 | Chr17:36510062–36519347 (+) | 1.112e-11 | |
| Glyma.19G026600 | hypothetical protein | AT4G13700:PAP23:purple acid phosphatase 23 | 2 | Chr19:3303658–3312907 (-) | 2.096e-17 | |
| Glyma.01G022300 | hypothetical protein | NA | 1 | Chr01:2215383–2217438 (+) | 9.982e-11 | |
| Glyma.02G133800 | hypothetical protein | AT1G49660:CXE5:carboxyesterase 5 | 1 | Chr02:13850366–13851962 (-) | 8.651e-17 | |
| Glyma.02G204700 | hypothetical protein | AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein | 1 | Chr02:38993365–39000790 (+) | 3.445e-12 | |
| Glyma.02G205300 | hypothetical protein | NA | 1 | Chr02:39037472–39038396 (-) | 2.61e-14 | |
| Glyma.03G016700 | hypothetical protein | AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | 1 | Chr03:1683395–1688893 (-) | 2.124e-12 | |
| Glyma.03G017800 | hypothetical protein | AT4G00770:TRM9:DUF4378 domain protein | 1 | Chr03:1780719–1783735 (+) | 7.068e-13 | |
| Glyma.03G018600 | hypothetical protein | AT2G45695:AT2G45695:Ubiquitin related modifier 1 | 1 | Chr03:1859210–1862572 (-) | 5.41e-13 | |
| Glyma.03G023000 | hypothetical protein | AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein | 1 | Chr03:2423540–2428634 (-) | 5.579e-14 | |
| Glyma.03G035800 | hypothetical protein | NA | 1 | Chr03:4317466–4321009 (+) | 3.047e-11 | |
| Glyma.03G177700 | hypothetical protein | NA | 1 | Chr03:39046772–39051158 (+) | 6.913e-12 | |
| Glyma.04G112200 | hypothetical protein | AT5G51750:SBT1.3:subtilase 1.3 | 1 | Chr04:12562882–12565006 (+) | 2.799e-13 | |
| Glyma.04G190900 | hypothetical protein | AT5G63160:BT1:BTB and TAZ domain protein 1__AT3G48360:BT2:BTB and TAZ domain protein 2 | 1 | Chr04:46152356–46155245 (-) | 8.004e-11 | |
| Glyma.05G232400 | hypothetical protein | AT3G24440:VRN5:Fibronectin type III domain-containing protein | 1 | Chr05:40992124–41003814 (+) | 2.603e-11 | |
| Glyma.05G232600 | hypothetical protein | AT4G13360:AT4G13360:ATP-dependent caseinolytic (Clp) protease/crotonase family protein__AT3G24360:AT3G24360:ATP-depende… | 1 | Chr05:41009642–41015826 (+) | 7.602e-11 | |
| Glyma.05G232800 | hypothetical protein | AT3G18500:AT3G18500:DNAse I-like superfamily protein | 1 | Chr05:41022747–41030067 (-) | 7.602e-11 | |
| Glyma.05G233100 | hypothetical protein | NA | 1 | Chr05:41041130–41048359 (-) | 7.602e-11 | |
| Glyma.05G233400 | ALMT9 | aluminum-activated malate transporter 9 | AT3G18440:ALMT9:aluminum-activated malate transporter 9 | 1 | Chr05:41058365–41063472 (-) | 7.602e-11 |
| Glyma.05G236400 | hypothetical protein | AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 | 1 | Chr05:41274513–41279615 (-) | 9.709e-11 | |
| Glyma.05G236700 | hypothetical protein | AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein | 1 | Chr05:41301540–41310727 (+) | 7.506e-15 | |
| Glyma.05G237800 | hypothetical protein | AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 | 1 | Chr05:41406807–41413022 (-) | 1.379e-11 | |
| Glyma.06G112300 | hypothetical protein | AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase | 1 | Chr06:9113982–9118848 (-) | 2.929e-13 | |
| Glyma.06G112600 | hypothetical protein | AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein | 1 | Chr06:9134358–9144986 (+) | 2.929e-13 | |
| Glyma.06G112700 | hypothetical protein | AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein | 1 | Chr06:9156973–9158659 (+) | 2.929e-13 | |
| Glyma.06G291300 | hypothetical protein | NA | 1 | Chr06:48016841–48019943 (+) | 5.284e-14 | |
| Glyma.06G291600 | hypothetical protein | AT4G22930:PYR4:pyrimidin 4 | 1 | Chr06:48024204–48029614 (+) | 4.399e-13 | |
| Glyma.06G291800 | hypothetical protein | NA | 1 | Chr06:48044194–48047197 (-) | 8.741e-13 | |
| Glyma.06G292000 | hypothetical protein | NA | 1 | Chr06:48081084–48084476 (-) | 4.399e-13 | |
| Glyma.06G292100 | hypothetical protein | NA | 1 | Chr06:48095366–48097378 (+) | 4.399e-13 | |
| Glyma.06G292200 | hypothetical protein | AT5G44290:AT5G44290:Protein kinase superfamily protein | 1 | Chr06:48100578–48107433 (-) | 8.741e-13 | |
| Glyma.06G292900 | hypothetical protein | AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) | 1 | Chr06:48170133–48173010 (-) | 1.653e-11 | |
| Glyma.06G293600 | hypothetical protein | AT1G03650:AT1G03650:Acyl-CoA N-acyltransferases (NAT) superfamily protein | 1 | Chr06:48251255–48252791 (+) | 6.296e-11 | |
| Glyma.06G307900 | hypothetical protein | NA | 1 | Chr06:49664901–49674729 (+) | 1.127e-11 | |
| Glyma.07G015700 | hypothetical protein | AT1G79750:NADP-ME4:NADP-malic enzyme 4 | 1 | Chr07:1244977–1251198 (-) | 9.037e-13 | |
| Glyma.07G017600 | hypothetical protein | NA | 1 | Chr07:1415837–1422680 (+) | 3.507e-13 | |
| Glyma.07G067600 | hypothetical protein | NA | 1 | Chr07:6091311–6093654 (-) | 1.171e-11 | |
| Glyma.07G068300 | hypothetical protein | AT5G62980:FOLB2:Dihydroneopterin aldolase__AT3G11750:FOLB1:Dihydroneopterin aldolase | 1 | Chr07:6169729–6172231 (+) | 3.406e-12 | |
| Glyma.08G016700 | hypothetical protein | AT1G63840:AT1G63840:RING/U-box superfamily protein | 1 | Chr08:1330226–1331366 (-) | 3.172e-13 | |
| Glyma.08G330400 | hypothetical protein | NA | 1 | Chr08:44820327–44823668 (+) | 5.757e-11 | |
| Glyma.08G330500 | hypothetical protein | AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein | 1 | Chr08:44824324–44827127 (-) | 5.757e-11 | |
| Glyma.09G016500 | hypothetical protein | NA | 1 | Chr09:1274652–1276853 (-) | 1.764e-12 | |
| Glyma.09G016800 | hypothetical protein | NA | 1 | Chr09:1300913–1311894 (+) | 7.638e-13 | |
| Glyma.09G018700 | hypothetical protein | NA | 1 | Chr09:1470411–1472672 (-) | 4.299e-11 | |
| Glyma.09G246700 | hypothetical protein | AT1G22840:CYTC-1:CYTOCHROME C-1 | 1 | Chr09:46835469–46838091 (-) | 1.964e-11 | |
| Glyma.10G078700 | hypothetical protein | NA | 1 | Chr10:8882318–8903950 (+) | 8.923e-11 | |
| Glyma.10G079100 | hypothetical protein | NA | 1 | Chr10:8960669–8962364 (-) | 8.923e-11 | |
| Glyma.10G079800 | hypothetical protein | NA | 1 | Chr10:9223520–9228511 (-) | 8.923e-11 | |
| Glyma.10G080000 | hypothetical protein | AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… | 1 | Chr10:9258476–9260697 (-) | 8.923e-11 | |
| Glyma.10G081200 | hypothetical protein | NA | 1 | Chr10:9600771–9603988 (-) | 3.816e-11 | |
| Glyma.10G081700 | hypothetical protein | NA | 1 | Chr10:9752508–9758422 (+) | 6.21e-13 | |
| Glyma.12G108600 | hypothetical protein | NA | 1 | Chr12:9994609–9997302 (-) | 8.657e-12 | |
| Glyma.12G109500 | hypothetical protein | AT4G03415:PP2C52:Protein phosphatase 2C family protein | 1 | Chr12:10308026–10314332 (-) | 8.656e-12 | |
| Glyma.12G114500 | hypothetical protein | AT4G22930:PYR4:pyrimidin 4 | 1 | Chr12:11396572–11400825 (-) | 2.298e-12 | |
| Glyma.12G114900 | hypothetical protein | NA | 1 | Chr12:11457987–11462951 (-) | 2.298e-12 | |
| Glyma.12G203700 | hypothetical protein | AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase | 1 | Chr12:36406747–36413696 (+) | 4.231e-11 | |
| Glyma.12G204000 | hypothetical protein | AT1G03687:AT1G03687:DTW domain-containing protein | 1 | Chr12:36428558–36432835 (+) | 1.306e-11 | |
| Glyma.12G204400 | hypothetical protein | AT4G03560:TPC1:two-pore channel 1 | 1 | Chr12:36473422–36498915 (+) | 1.306e-11 | |
| Glyma.13G134300 | hypothetical protein | NA | 1 | Chr13:24664171–24665742 (-) | 4.849e-13 | |
| Glyma.13G134500 | hypothetical protein | AT3G09560:PAH1:Lipin family protein | 1 | Chr13:24696109–24705068 (-) | 1.156e-11 | |
| Glyma.13G135300 | hypothetical protein | NA | 1 | Chr13:24770681–24773826 (+) | 4.666e-11 | |
| Glyma.13G135400 | hypothetical protein | AT5G12130:PDE149:integral membrane TerC family protein | 1 | Chr13:24786242–24791938 (+) | 4.666e-11 | |
| Glyma.13G135500 | hypothetical protein | AT5G02780:GSTL1:glutathione transferase lambda 1 | 1 | Chr13:24798567–24801567 (+) | 5.768e-12 | |
| Glyma.13G149700 | hypothetical protein | AT3G10040:AT3G10040:sequence-specific DNA binding transcription factor | 1 | Chr13:26321941–26324172 (+) | 1.702e-12 | |
| Glyma.13G203200 | hypothetical protein | AT3G52105:AT3G52105:DIS3-exonuclease-like protein | 1 | Chr13:31720004–31725252 (+) | 5.232e-12 | |
| Glyma.13G203300 | hypothetical protein | AT3G63530:BB:RING/U-box superfamily protein | 1 | Chr13:31727841–31735910 (-) | 5.232e-12 | |
| Glyma.13G203700 | hypothetical protein | NA | 1 | Chr13:31780982–31784218 (+) | 5.232e-12 | |
| Glyma.13G203900 | hypothetical protein | NA | 1 | Chr13:31793697–31796601 (-) | 4.808e-12 | |
| Glyma.14G068100 | hypothetical protein | AT3G12550:FDM3:XH/XS domain-containing protein | 1 | Chr14:5701618–5711043 (-) | 3.55e-13 | |
| Glyma.14G201700 | hypothetical protein | NA | 1 | Chr14:46711634–46715644 (-) | 8.423e-12 | |
| Glyma.15G048200 | hypothetical protein | AT1G25260:AT1G25260:Ribosomal protein L10 family protein | 1 | Chr15:3812816–3815263 (+) | 8.634e-11 | |
| Glyma.15G121100 | hypothetical protein | NA | 1 | Chr15:9567797–9570248 (+) | 1.705e-13 | |
| Glyma.15G121300 | hypothetical protein | AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 | 1 | Chr15:9584685–9590201 (-) | 2.1e-12 | |
| Glyma.15G121500 | hypothetical protein | AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein | 1 | Chr15:9602794–9615281 (+) | 1.705e-13 | |
| Glyma.15G121800 | hypothetical protein | NA | 1 | Chr15:9643746–9648073 (+) | 1.705e-13 | |
| Glyma.15G124500 | MLO-like protein 13 | AT4G24250:MLO13:Seven transmembrane MLO family protein | 1 | Chr15:9888761–9894068 (-) | 1.295e-16 | |
| Glyma.16G050500 | AFB3B | auxin signaling F-box 3 protein | AT3G26810:AFB2:auxin signaling F-box 2 | 1 | Chr16:4853237–4856710 (+) | 2.031e-15 |
| Glyma.16G050900 | COL16 | NA | 1 | Chr16:4874634–4878624 (+) | 4.281e-12 | |
| Glyma.16G051900 | hypothetical protein | NA | 1 | Chr16:5009359–5009660 (+) | 4.599e-11 | |
| Glyma.16G105100 | hypothetical protein | NA | 1 | Chr16:21259552–21267517 (-) | 5.123e-11 | |
| Glyma.16G105400 | hypothetical protein | AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein | 1 | Chr16:21357465–21364357 (-) | 1.046e-11 | |
| Glyma.16G111100 | hypothetical protein | NA | 1 | Chr16:24438458–24444801 (+) | 1.87e-13 | |
| Glyma.16G111400 | hypothetical protein | AT4G35510:AT4G35510:PHD finger-like protein | 1 | Chr16:24546422–24549336 (+) | 8.261e-13 | |
| Glyma.16G117400 | hypothetical protein | NA | 1 | Chr16:26234552–26238233 (-) | 4.948e-12 | |
| Glyma.16G118100 | hypothetical protein | AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein | 1 | Chr16:26324650–26336836 (+) | 4.768e-13 | |
| Glyma.16G119300 | hypothetical protein | NA | 1 | Chr16:26643902–26644416 (+) | 4.067e-13 | |
| Glyma.16G119400 | hypothetical protein | NA | 1 | Chr16:26684278–26687087 (+) | 3.589e-11 | |
| Glyma.16G196400 | hypothetical protein | AT5G07270:XBAT33:uncharacterized protein | 1 | Chr16:35782198–35790495 (-) | 5.92e-11 | |
| Glyma.16G209900 | hypothetical protein | NA | 1 | Chr16:36919141–36924601 (+) | 3.843e-11 | |
| Glyma.16G210400 | hypothetical protein | AT1G73350:AT1G73350:ankyrin repeat protein | 1 | Chr16:36949685–36953467 (+) | 9.914e-13 | |
| Glyma.17G121800 | hypothetical protein | AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 | 1 | Chr17:9746590–9748712 (+) | 6.539e-11 | |
| Glyma.17G258200 | GASA29 | gibberellin-regulated protein 29 | NA | 1 | Chr17:41222782–41223797 (-) | 4.367e-11 |
| Glyma.17G258400 | hypothetical protein | AT1G30755:AT1G30755:elongation factor G, putative (DUF668) | 1 | Chr17:41248979–41254225 (+) | 1.278e-11 | |
| Glyma.18G045700 | hypothetical protein | NA | 1 | Chr18:3956176–3958846 (+) | 4.355e-11 | |
| Glyma.18G212700 | hypothetical protein | AT5G01820:SR1:serine/threonine protein kinase 1 | 1 | Chr18:49942123–49944169 (-) | 1.143e-11 | |
| Glyma.19G012100 | hypothetical protein | AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 | 1 | Chr19:1155711–1161298 (-) | 8.527e-12 | |
| Glyma.19G012300 | hypothetical protein | NA | 1 | Chr19:1165111–1173031 (-) | 8.527e-12 | |
| Glyma.19G031200 | hypothetical protein | NA | 1 | Chr19:3870532–3874170 (-) | 1.716e-11 | |
| Glyma.19G032500 | hypothetical protein | NA | 1 | Chr19:4140729–4141955 (-) | 9.159e-11 | |
| Glyma.20G019800 | hypothetical protein | AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein | 1 | Chr20:2051817–2057262 (+) | 6.396e-11 | |
| Glyma.20G065100 | hypothetical protein | AT2G22330:CYP79B3:cytochrome P450, family 79, subfamily B, polypeptide 3 | 1 | Chr20:23009963–23012683 (+) | 4.874e-11 | |
| Glyma.20G211500 | hypothetical protein | AT3G63410:APG1:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | 1 | Chr20:44820994–44827443 (+) | 2.103e-11 |