Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P10032

Metabolite ID
P10032
Deionized mass
625.1666 Da
Average m/z
626.1709
Average RT
10.3372
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
76
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

76 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)3.348e-12
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)4.511e-14
Glyma.13G224800 hypothetical protein NA 3Chr13:33748627–33756494 (-)1.249e-11
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)7.273e-15
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)7.617e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.42e-11
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)2.594e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)4.511e-14
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)5.508e-13
Glyma.03G136100 hypothetical protein NA 1Chr03:35199503–35203392 (-)3.171e-11
Glyma.03G169700 hypothetical protein AT2G20240:TRM17:GPI-anchored adhesin-like protein, putative (DUF3741)__AT4G28760:TRM20:methyl-coenzyme M reductase II s… 1Chr03:38442950–38448706 (+)5.002e-12
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)3.287e-13
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)1.347e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)2.056e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)3.16e-14
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)8.54e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.381e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.946e-14
Glyma.06G081600 hypothetical protein AT5G11490:AT5G11490:adaptin family protein 1Chr06:6273644–6283819 (+)3.402e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.967e-16
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.967e-16
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)2.658e-14
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)7.759e-12
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)2.658e-14
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)2.658e-14
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)7.759e-12
Glyma.06G296500 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr06:48551973–48557217 (-)5.576e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.397e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)2.585e-12
Glyma.08G114800 hypothetical protein AT5G19830:AT5G19830:Peptidyl-tRNA hydrolase family protein 1Chr08:8792663–8798214 (-)1.282e-11
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)6.939e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)7.617e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)7.617e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)7.617e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)7.617e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.839e-11
Glyma.09G018700 hypothetical protein NA 1Chr09:1470411–1472672 (-)5.286e-12
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)3.042e-13
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.551e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)3.664e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.913e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)2.912e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)1.767e-13
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)2.538e-14
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)1.703e-12
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)1.703e-12
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)1.703e-12
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)6.771e-14
Glyma.13G224300 hypothetical protein NA 1Chr13:33703380–33715996 (-)1.249e-11
Glyma.13G224500 hypothetical protein AT1G29750:RKF1:receptor-like kinase in flowers 1 1Chr13:33725180–33735368 (+)1.564e-11
Glyma.13G237900 hypothetical protein NA 1Chr13:34809361–34816888 (-)1.576e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)2.807e-11
Glyma.14G094200 hypothetical protein AT5G11840:AT5G11840:YCF36, putative (DUF1230) 1Chr14:8770378–8774149 (-)4.488e-13
Glyma.14G094300 hypothetical protein NA 1Chr14:8771316–8772515 (+)4.488e-13
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)2.417e-13
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.42e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)2.594e-11
Glyma.16G057700 hypothetical protein AT3G27180:AT3G27180:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr16:5656328–5663040 (-)7.765e-12
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)1.86e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)3.348e-12
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)2.005e-11
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)9.136e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)6.638e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)3.123e-11
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)6.257e-13
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)2.998e-13
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)3.395e-11
Glyma.18G111000 F6'H1 feruloyl CoA ortho-hydroxylase 1 NA 1Chr18:13141007–13143331 (-)1.918e-14
Glyma.18G111300 hypothetical protein AT2G30870:GSTF10:glutathione S-transferase PHI 10 1Chr18:13192438–13193751 (+)7.373e-13
Glyma.18G111800 hypothetical protein AT1G32910:AT1G32910:HXXXD-type acyl-transferase family protein 1Chr18:13278653–13284970 (+)3.678e-15
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)7.249e-19
Glyma.18G220200 hypothetical protein AT2G38650:GAUT7:galacturonosyltransferase 7 1Chr18:50714270–50723555 (-)2.317e-11
Glyma.18G220300 hypothetical protein NA 1Chr18:50719690–50720509 (-)2.317e-11
Glyma.18G274000 hypothetical protein AT5G38895:AT5G38895:RING/U-box superfamily protein 1Chr18:55663429–55669796 (-)5.221e-13
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)8.684e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)4.028e-11