P09906
Metabolite ID
P09906
Deionized mass
259.1479 Da
Average m/z
260.1560
Average RT
10.2958
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
71
GWAS result file
Available
Candidate annotations
Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations
GWAS Evidence
Dataset: indexed GWAS records.
SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.
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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage
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Associated genes
71 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.
| Gene ID | Alias | Description | Arabidopsis ortholog | Supporting SNP records | Gene interval (1-based) | Minimum P |
|---|---|---|---|---|---|---|
| Glyma.16G147900 | hypothetical protein | NA | 3 | Chr16:30864919–30872425 (+) | 1.205e-12 | |
| Glyma.08G150100 | hypothetical protein | AT2G44450:BGLU15:beta glucosidase 15 | 2 | Chr08:11525692–11536927 (+) | 2.378e-13 | |
| Glyma.12G203700 | hypothetical protein | AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase | 2 | Chr12:36406747–36413696 (+) | 8.024e-13 | |
| Glyma.13G135700 | hypothetical protein | NA | 2 | Chr13:24812720–24818735 (+) | 2.757e-12 | |
| Glyma.13G135800 | hypothetical protein | AT5G02800:CDL1:Protein kinase superfamily protein | 2 | Chr13:24820151–24823999 (-) | 2.757e-12 | |
| Glyma.14G093100 | hypothetical protein | NA | 2 | Chr14:8654730–8655892 (-) | 1.578e-11 | |
| Glyma.14G149300 | hypothetical protein | NA | 2 | Chr14:32235308–32258014 (+) | 4.25e-11 | |
| Glyma.16G146700 | hypothetical protein | NA | 2 | Chr16:30755899–30759360 (-) | 4.312e-14 | |
| Glyma.01G039700 | hypothetical protein | AT1G10385:AT1G10385:Vps51/Vps67 family (components of vesicular transport) protein | 1 | Chr01:4304713–4310259 (-) | 7.737e-11 | |
| Glyma.02G295900 | hypothetical protein | NA | 1 | Chr02:47375932–47378006 (+) | 8.75e-13 | |
| Glyma.02G296200 | hypothetical protein | AT5G55390:EDM2:ENHANCED DOWNY MILDEW 2 | 1 | Chr02:47383044–47395946 (-) | 8.75e-13 | |
| Glyma.02G296300 | hypothetical protein | AT5G55400:AT5G55400:Actin binding Calponin homology (CH) domain-containing protein | 1 | Chr02:47399263–47406220 (-) | 1.959e-12 | |
| Glyma.03G023000 | hypothetical protein | AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein | 1 | Chr03:2423540–2428634 (-) | 3.955e-11 | |
| Glyma.03G135300 | hypothetical protein | NA | 1 | Chr03:35092248–35097578 (+) | 8.538e-11 | |
| Glyma.03G177700 | hypothetical protein | NA | 1 | Chr03:39046772–39051158 (+) | 1.282e-11 | |
| Glyma.04G112200 | hypothetical protein | AT5G51750:SBT1.3:subtilase 1.3 | 1 | Chr04:12562882–12565006 (+) | 3.569e-12 | |
| Glyma.04G116900 | hypothetical protein | NA | 1 | Chr04:13696275–13700803 (+) | 4.553e-12 | |
| Glyma.05G034000 | hypothetical protein | AT4G03400:DFL2:Auxin-responsive GH3 family protein | 1 | Chr05:2965889–2971412 (-) | 5.748e-11 | |
| Glyma.05G137500 | hypothetical protein | NA | 1 | Chr05:33012282–33015297 (-) | 1.301e-14 | |
| Glyma.05G137600 | hypothetical protein | NA | 1 | Chr05:33018107–33020120 (-) | 4.9e-14 | |
| Glyma.05G224700 | hypothetical protein | NA | 1 | Chr05:40351005–40361888 (+) | 2.579e-13 | |
| Glyma.05G226000 | hypothetical protein | AT5G19730:AT5G19730:Pectin lyase-like superfamily protein | 1 | Chr05:40458098–40461736 (+) | 6.853e-13 | |
| Glyma.05G236400 | hypothetical protein | AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 | 1 | Chr05:41274513–41279615 (-) | 2.548e-13 | |
| Glyma.05G236700 | hypothetical protein | AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein | 1 | Chr05:41301540–41310727 (+) | 1.041e-11 | |
| Glyma.06G317100 | hypothetical protein | AT5G61520:AT5G61520:Major facilitator superfamily protein | 1 | Chr06:50586679–50589765 (+) | 1.008e-11 | |
| Glyma.07G017600 | hypothetical protein | NA | 1 | Chr07:1415837–1422680 (+) | 7.657e-11 | |
| Glyma.08G150000 | hypothetical protein | AT2G32850:AT2G32850:Protein kinase superfamily protein | 1 | Chr08:11518864–11523442 (-) | 2.571e-11 | |
| Glyma.09G080200 | hypothetical protein | NA | 1 | Chr09:9256042–9263239 (-) | 1.003e-12 | |
| Glyma.09G082000 | hypothetical protein | NA | 1 | Chr09:9638564–9650178 (+) | 1.439e-12 | |
| Glyma.09G084300 | hypothetical protein | AT2G34680:AIR9:Outer arm dynein light chain 1 protein | 1 | Chr09:10129602–10197250 (-) | 7.943e-12 | |
| Glyma.11G064300 | hypothetical protein | AT4G36780:BEH2:BES1/BZR1 homolog 2 | 1 | Chr11:4849799–4851673 (+) | 2.934e-11 | |
| Glyma.12G108600 | hypothetical protein | NA | 1 | Chr12:9994609–9997302 (-) | 1.23e-11 | |
| Glyma.12G109500 | hypothetical protein | AT4G03415:PP2C52:Protein phosphatase 2C family protein | 1 | Chr12:10308026–10314332 (-) | 1.23e-11 | |
| Glyma.12G202200 | hypothetical protein | AT2G20860:LIP1:lipoic acid synthase 1 | 1 | Chr12:36267599–36271584 (+) | 4.33e-16 | |
| Glyma.12G202300 | hypothetical protein | NA | 1 | Chr12:36275438–36276838 (+) | 4.33e-16 | |
| Glyma.12G202400 | hypothetical protein | AT4G03415:PP2C52:Protein phosphatase 2C family protein | 1 | Chr12:36289704–36295084 (-) | 2.938e-14 | |
| Glyma.12G203600 | EXPB8 | AT2G20750:EXPB1:expansin B1 | 1 | Chr12:36390283–36394245 (-) | 7.786e-15 | |
| Glyma.12G204000 | hypothetical protein | AT1G03687:AT1G03687:DTW domain-containing protein | 1 | Chr12:36428558–36432835 (+) | 1.268e-12 | |
| Glyma.12G204400 | hypothetical protein | AT4G03560:TPC1:two-pore channel 1 | 1 | Chr12:36473422–36498915 (+) | 1.268e-12 | |
| Glyma.12G205900 | hypothetical protein | NA | 1 | Chr12:36622011–36625824 (+) | 1.791e-12 | |
| Glyma.13G095000 | hypothetical protein | NA | 1 | Chr13:21005327–21006774 (-) | 3.5e-12 | |
| Glyma.13G135300 | hypothetical protein | NA | 1 | Chr13:24770681–24773826 (+) | 2.757e-12 | |
| Glyma.13G135400 | hypothetical protein | AT5G12130:PDE149:integral membrane TerC family protein | 1 | Chr13:24786242–24791938 (+) | 2.757e-12 | |
| Glyma.13G135500 | hypothetical protein | AT5G02780:GSTL1:glutathione transferase lambda 1 | 1 | Chr13:24798567–24801567 (+) | 2.049e-11 | |
| Glyma.13G161900 | PAP25 | purple acid phosphatase | AT5G34850:PAP26:purple acid phosphatase 26 | 1 | Chr13:27748190–27752685 (-) | 6.131e-11 |
| Glyma.14G094900 | hypothetical protein | AT1G60960:IRT3:iron regulated transporter 3 | 1 | Chr14:8824846–8827258 (-) | 4.175e-11 | |
| Glyma.14G148800 | hypothetical protein | AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein | 1 | Chr14:32154755–32157298 (+) | 4.25e-11 | |
| Glyma.15G035600 | hypothetical protein | AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III | 1 | Chr15:2830678–2835534 (+) | 5.216e-14 | |
| Glyma.15G121100 | hypothetical protein | NA | 1 | Chr15:9567797–9570248 (+) | 3.091e-12 | |
| Glyma.15G121300 | hypothetical protein | AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 | 1 | Chr15:9584685–9590201 (-) | 1.557e-14 | |
| Glyma.15G121500 | hypothetical protein | AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein | 1 | Chr15:9602794–9615281 (+) | 3.091e-12 | |
| Glyma.15G121800 | hypothetical protein | NA | 1 | Chr15:9643746–9648073 (+) | 3.091e-12 | |
| Glyma.16G105100 | hypothetical protein | NA | 1 | Chr16:21259552–21267517 (-) | 1.091e-11 | |
| Glyma.16G106300 | hypothetical protein | AT5G23900:AT5G23900:Ribosomal protein L13e family protein | 1 | Chr16:21495147–21497932 (+) | 1.141e-12 | |
| Glyma.16G117400 | hypothetical protein | NA | 1 | Chr16:26234552–26238233 (-) | 5.087e-11 | |
| Glyma.16G118100 | hypothetical protein | AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein | 1 | Chr16:26324650–26336836 (+) | 3.099e-11 | |
| Glyma.16G119400 | hypothetical protein | NA | 1 | Chr16:26684278–26687087 (+) | 9.074e-12 | |
| Glyma.16G144100 | hypothetical protein | NA | 1 | Chr16:30432951–30434052 (-) | 1.523e-12 | |
| Glyma.16G144700 | hypothetical protein | AT5G66960:AT5G66960:Prolyl oligopeptidase family protein | 1 | Chr16:30514629–30519598 (+) | 4.814e-11 | |
| Glyma.16G145100 | hypothetical protein | NA | 1 | Chr16:30578388–30581421 (-) | 4.147e-13 | |
| Glyma.16G145200 | hypothetical protein | NA | 1 | Chr16:30586018–30588859 (-) | 9.642e-11 | |
| Glyma.16G145600 | hypothetical protein | AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… | 1 | Chr16:30652378–30659548 (+) | 4.147e-13 | |
| Glyma.16G146300 | hypothetical protein | NA | 1 | Chr16:30714315–30716624 (+) | 4.312e-14 | |
| Glyma.16G147000 | hypothetical protein | NA | 1 | Chr16:30773803–30777822 (-) | 3.094e-12 | |
| Glyma.16G147400 | hypothetical protein | NA | 1 | Chr16:30817535–30821568 (+) | 1.477e-11 | |
| Glyma.17G135100 | hypothetical protein | AT1G62840:AT1G62840:ankyrin repeat/KH domain protein (DUF1442) | 1 | Chr17:10870710–10872285 (+) | 7.735e-11 | |
| Glyma.18G112600 | hypothetical protein | NA | 1 | Chr18:13398219–13405422 (+) | 2.414e-11 | |
| Glyma.19G012100 | hypothetical protein | AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 | 1 | Chr19:1155711–1161298 (-) | 3.548e-11 | |
| Glyma.19G012300 | hypothetical protein | NA | 1 | Chr19:1165111–1173031 (-) | 3.548e-11 | |
| Glyma.20G019500 | hypothetical protein | AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme | 1 | Chr20:2039210–2040459 (+) | 2.536e-11 | |
| Glyma.20G019800 | hypothetical protein | AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein | 1 | Chr20:2051817–2057262 (+) | 3.319e-11 |