Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P09873

Metabolite ID
P09873
Deionized mass
359.1980 Da
Average m/z
360.2059
Average RT
10.2875
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
90
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

90 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)4.983e-12
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)1.55e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)3.308e-12
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)3.238e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)6.791e-14
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)5.548e-14
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)3.381e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.225e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)2.604e-13
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)4.983e-12
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)5.136e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)5.665e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)3.265e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)6.195e-15
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)4.707e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)8.845e-12
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)2.105e-11
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)1.061e-11
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)2.53e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.852e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.983e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)6.098e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.325e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.325e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.325e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)8.157e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)8.157e-12
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)5.749e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)3.016e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)3.308e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)3.308e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)3.308e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)3.308e-12
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)7.747e-13
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)8.397e-12
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)8.889e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)2.632e-13
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)7.335e-11
Glyma.09G272300 hypothetical protein AT5G01950:AT5G01950:Leucine-rich repeat protein kinase family protein 1Chr09:48873276–48883421 (-)4.807e-11
Glyma.09G272800 hypothetical protein AT3G08670:AT3G08670:serine/arginine repetitive matrix-like protein 1Chr09:48916725–48921396 (+)4.807e-11
Glyma.10G080400 hypothetical protein AT2G33990:iqd9:IQ-domain 9 1Chr10:9454616–9455485 (+)6.465e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)5.54e-11
Glyma.10G081300 hypothetical protein NA 1Chr10:9621308–9625766 (-)6.465e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)4.322e-12
Glyma.11G105600 hypothetical protein NA 1Chr11:8021436–8024175 (+)3.682e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)7.323e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)7.322e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.603e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.603e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)2.636e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.382e-15
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)5.548e-14
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)3.731e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)3.381e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)4.553e-12
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)2.604e-13
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.936e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)3.015e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.936e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.936e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)6.778e-11
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)2.1e-11
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)2.1e-11
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)1.365e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)1.55e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)1.55e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)1.55e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)1.55e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)2.899e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.414e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)9.197e-13
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)4.037e-13
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)1.662e-13
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)3.209e-11
Glyma.16G189200 hypothetical protein AT3G48970:AT3G48970:Heavy metal transport/detoxification superfamily protein 1Chr16:35177846–35179798 (+)7.647e-12
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)2.425e-12
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.135e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.135e-12
Glyma.17G092800 hypothetical protein NA 1Chr17:7253511–7255621 (-)6.32e-11
Glyma.17G135100 hypothetical protein AT1G62840:AT1G62840:ankyrin repeat/KH domain protein (DUF1442) 1Chr17:10870710–10872285 (+)8.349e-11
Glyma.18G108400 hypothetical protein NA 1Chr18:12370997–12390275 (-)3.74e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)3.087e-12
Glyma.19G119200 hypothetical protein AT3G03630:CS26:cysteine synthase 26 1Chr19:37677773–37683394 (+)1.176e-12
Glyma.19G127500 hypothetical protein NA 1Chr19:38615244–38616720 (-)9.827e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)8.95e-11
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)6.655e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.302e-11
Glyma.20G105100 hypothetical protein NA 1Chr20:34737596–34737811 (-)1.338e-13
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)1.963e-11
Glyma.20G107700 hypothetical protein AT2G16860:AT2G16860:GCIP-interacting family protein 1Chr20:35033414–35036538 (+)1.531e-11